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21 protocols using n ethyl n 3 dimethylaminopropyl carbodiimide edc

1

Cathepsin D Inhibitor Interaction Assay

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The following reagents were used in the experimental part: Cathepsin D protein (SIGMA, Steinheim, Germany) and its specific inhibitor—pepstatin A (SIGMA, Steinheim, Germany), human albumine, (SIGMA, Steinheim, Germany), N-hydroxysuccinimide (NHS) (SIGMA ALDRICH, Munich, Germany), N-Ethyl-N′-(3-dimethylaminopropyl) carbodiimide (EDC) (SIGMA ALDRICH, Munich, Germany), cysteamine hydrochloride acting as a linker (SIGMA ALDRICH, Munich, Germany), phosphate-buffered saline (PBS) pH = 7.4 (BIOMED, Lublin, Poland), acetate buffer pH = 3.50 (BIOMED, Lublin, Poland), carbonate buffer pH = 8.50–9.86 (BIOMED, Lublin, Poland).
The solvents used to prepare solutions were absolute ethanol 99.8% (POCh, Gliwice, Poland) and MilliQ water (Simplicity® Millipore). Measurements were performed with two types of glass chips coated with ultrathin metal layers: the first with a 50 nm layer of gold (Sens, Netherlands), and the second evaporated with a 42 nm layer of silver and a 5 nm layer of gold (Bialystok University of Technology).
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2

Folic Acid-Mediated Targeted Drug Delivery

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Gold (III) chloride trihydrate (HAuCl4.3H2O, M.W. 393.83 g/mol), docetaxel (Dtx) (C43H53NO14, M.W. 807.879 g/mol), folic acid (FA) (C19H19N7O6, MW. 441.40 g/mol), N-ethyl-N-(3-dimethyl aminopropyl) carbodiimide (EDC) (C8H17N3, MW.155.245 g/mol), N-hydroxy succinimide (NHS) (C6H5NO3, MW.115.09 g/mol), Trypsin EDTA, Ham’s F12 (F-12 nutrient medium), l-Glutamine (C5H10N2O3, MW.146.146 g/mol), sodium bicarbonate (NaHCO3), non-essential amino acids and fetal bovine serum (FBS) were procured from Sigma Aldrich Chemicals, USA. Trisodium citrate (Na3C6H5O7, MW. 258.06 g/mol), N,N-dimethyl sulfoxide (DMSO) (C2H6OS), disodium hydrogen phosphate (Na2HPO4, MW.141.96 g/mol) and orthophosphoric acid (H3PO4, MW.97.994 g/mol) were purchased from Merck Chemicals, Mumbai. Ethanol (99.9%) was received from Changshu Hongsheng Fine Chemical Co., Ltd, China. Premix WST-1cell proliferation assay kit was procured from Takara scientific company (USA). Human prostate cancer cell lines of PC3 were received from National Centre for Cell Science (NCCS), Pune, India. PC3 cells were maintained with Ham’s F12 (F-12 Nutrient Medium) and 10% FBS (maintenance medium). All the chemicals were used without any purification and Millipore water was used throughout the experiment.
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3

Synthesis of Resveratrol Butyrate Ester

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RBE was synthesized according to the method described by Tain et al. [39 (link)]. RSV (TCI Development Co., Ltd., Shanghai, China) was mixed with butyric acid (ACROS, New Jersey, USA) in tetrahydrofuran (THF) (Echo Chemical Co., Ltd., Miaoli County, Taiwan). Subsequently, N-ethyl-N′-(3-dimethylaminopropyl) carbodiimide (EDC) (Sigma-Aldrich, Missouri, USA) and 4-dimethylaminopyridine (DMAP) (Sigma-Aldrich, Missouri, USA) were added, and the esterification reaction was carried out for 48 h in the absence of light. Upon completion of the reaction, a copious amount of distilled water was added, and the reaction mixture was filtered to obtain the precipitated RBE, which was freeze-dried and stored at −20 °C. The novel RBE was produced by the esterification of RSV and butyric acid, including RSV (about 17.11%), RBE monoester (47.12%), and RBE diester (35.00%) [40 (link)].
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4

Surface Functionalization for Biosensing Applications

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The materials used in this study included glass substrates (7059 glass; Corning Inc., Corning, NY, USA), SiO2 sputter target (purity ≥99.99%, THIFINE Co. Ltd., Incheon, Republic of Korea), indium tin oxide (ITO) sputter target (purity ≥99.99%, THIFINE Co. Ltd.), SnO2 sputter target (purity ≥99.99%, THIFINE Co. Ltd.), 30:1 buffered oxide etchant (BOE; J.T. Baker, Phillipsburg, NJ, USA), phosphosilicate glass (PSG; Filmtronics Inc., Butler, PA, USA), polydimethylsiloxane (PDMS; Sylgard 184 silicon elastomer; Dow corning, Midland, MI, USA), pH buffer solution (Samchun chemical, Pyeongtack, Republic of Korea), ethanol (Samchun chemical), (3-aminopropyl)triethoxysilane (APTES; purity ≥99%, molecular weight = 221.37 g/mol, Sigma-Aldrich, St. Louis, MO, USA), 4-carboxyphenylboronic acid (4-CPBA; molecular weight = 165.94 g/mol, Sigma-Aldrich), N-ethyl-N’-(3-dimethylaminopropyl)carbodiimide (EDC; purity ≥97%, molecular weight = 155.24 g/mol, Sigma-Aldrich), N-hydroxysuccinimide (NHS; purity ≥98%, molecular weight = 115.09 g/mol, Sigma-Aldrich), MES hydrate (purity ≥99.5%, molecular weight = 195.24 g/mol, Sigma-Aldrich), phosphate buffered saline (PBS; pH 7.4, Sigma-Aldrich), deionized water (DI water; conductivity ≤4.3 μS/cm, Sigma-Aldrich), and DA hydrochloride (gene information = ADRB1, molecular weight = 189.64 g/mol, Sigma-Aldrich).
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5

Electrochemical Immunosensor for cTnT Detection

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Mouse monoclonal antibody against cTnT (mAb-cTnT), cTnT, and peroxidase conjugated mouse monoclonal antibody against cTnT (mAb-cTnT-HRP) were purchased from Calbiochem (Darmstadt, DEU). COOH-functionalized multiwalled carbon nanotubes (MWCNTs) were obtained from Dropsens (Oviedo, ESP). EDA, N-ethyl-N′-(3-dimethylaminopropyl) carbodiimide (EDC), N-hydroxysuccinimide (NHS), dimethylformamide (DMF), and glycine were acquired from Sigma-Aldrich (St. Louis, USA). Ethanol, sulfuric acid (H2SO4) (98%, w/v), and hydrogen peroxide (H2O2) (30%, w/v) were obtained from F. Maia (Cotia, BRA). All reagents were of analytical grade. The water used to prepare all solutions was obtained from a Milli-Q water purification system (Billerica, USA). All the solutions were freshly prepared prior to each experiment.
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6

Fabrication and Characterization of Functionalized Glass Chip

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The following reagents were used in the experimental part: normal mouse IgG antibodies FITC conjugate (0.06 mg mL−1) (SIGMA ALDRICH, Munich, Germany), anti-mouse IgG antibodies FITC produced in rabbit, IgG fraction of antiserum (10 mg mL−1) (SIGMA ALDRICH, Munich, Germany), N-hydroxy-succinimide (NHS) (SIGMA ALDRICH, Munich, Germany), N-Ethyl-N′-(3-dimethylaminopropyl) carbodiimide (EDC) (SIGMA ALDRICH, Munich, Germany), 11-Mercaptoundecanoic acid (MUA) acting as a linker (SIGMA ALDRICH, Munich, Germany), phosphate-buffered saline (PBS) pH = 7.4 (BIOMED, Lublin, Poland), acetate buffer pH = 3.50 (BIOMED, Lublin, Poland), carbonate buffer pH = 8.50–9.86 (BIOMED, Lublin, Poland). The solvents used to prepare solutions were absolute ethanol 99.8% (POCh, Gliwice, Poland) and MilliQ water (Simplicity® Millipore, Burlington, MA, USA).
Measurements were performed with one type of glass chip coated with thin film metal layers: with a 0.1 nm of chromium, 44.8 nm layer of silver and a 3.3 nm layer of gold (Bialystok University of Technology).
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7

Optimizing Collagen Hydrogel Mechanics

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Collagen fibers were used as a reinforcement for optimisation of mechanical properties of the collagen hydrogels. Fibers based on collagen (type I, VUP Medical, Brno, Czech Republic) were prepared via the electrospinning (4SPIN, Contipro, Dolní Dobrouč, Czech Republic) of an 8 wt% collagen PBS/ethanol solution modified by 8 wt% (to collagen) polyethylene oxide (PEO; Mr. 900,000, Sigma-Aldrich, St. Louis, MO, USA). The stability of all the collagen layers was enhanced by means of crosslinking with a 95% ethanol solution containing N-ethyl-N′-(3-(dimethylaminopropyl)carbodiimide (EDC) and N-hydroxysuccinimide (NHS) at a weight ratio of 4:1 (both Sigma-Aldrich, St. Louis, Missouri, USA), for 24 h at 37 °C. Cross-linked layers were further washed in 0.1 M Na2HPO4 (2 × 45 min), and by rinsed using deionised water (30 min). In this step, PEO was fully leached out [75 (link)]. The materials were then frozen at −30 °C for 5 h and lyophilised. Collagen fibers were then swelled in ethanol (100%), and their homogenisation, resulting in particle formation, was achieved using a disintegrator (10,000 rpm, 10 min), followed by rinsing with deionised water (30 min), freezing at −30 °C and lyophilising.
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8

Nanomaterial Synthesis and Characterization

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Collagenase type XI, exendin-4 (Ex4), Histopaque®-1077, manganese (II) chloride (MnCl2·4H2O, 99%), iron (III) acetylacetonate (Fe(acac)3, 99.9%), methyl poly(ethylene glycol) (mPEG, M.W. = 2000), N-hydroxysuccinimide (NHS), N-ethyl-N′-(3-dimethylaminopropyl) carbodiimide (EDC), oleic acid (90%), oleylamine (90%), osmium tetroxide (1%), propidium iodide (PI) and Prussian blue were purchased from Sigma–Aldrich (St. Louis, MO, USA). N-Boc-ethylenediamine (98%) and Acryloyl chloride (96%) were from Alfa Aesar (Ward Hill, MA, USA). Benzyl ether and (3-Aminopropyl) triethoxy silane (APTES, 98%) were from Fluka (Buchs, Switzerland). N-hydroxybenzotriazole (HOBt) and (Benzotriazol-1-yloxy) tripyrrolidinophosphonium hexafluorophosphate (PyBOP) were from NovaBiochem (Beeston, UK). RPMI-1640 medium and Dulbecco’s modified Eagle’s medium (DMEM) were from GIBCO BRL (Grand Island, NY, USA). Insulin radioimmunoassay (RIA) kit was from Millipore Corporation (Billerica, MA, USA). Polyethylene (PE-50) tubing was from Clay Adams (Parsippany, NJ, USA). Guinea pig anti-swine insulin antibody and rabbit anti-human glucagon antibody were from Dako (Carpinteria, CA, USA). Guinea pig anti-human insulin antibody (ab7842) was from Abcam (Cambridge, MA, USA).
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9

Carbodiimide-Mediated Synthesis of PEGylated Biomaterials

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Dicyclohexyl carbodiimide (DCC) (Cat # 802954), Dimethylformamide (DMF) (Cat # 103053), Poly (ethylene glycol) diacid (Cat # 843912), and anhydrous citric acid (Cat # 818707) were purchased from Merck. PD‐10 desalting columns containing Sephadex G‐25 resin (Cat # 170851) and Sephadex G15 (Cat # 170020) were purchased from GE Healthcare. N‐Hydroxysuccinimide (NHS) (Cat # 130672), RPMI 1640 (Cat # R8758), XTT (Cat # X4626), Hochest (Cat # B1155), and N‐Ethyl‐N′‐(3‐dimethylaminopropyl) carbodiimide (EDC) (Cat # E1769) were purchased from Sigma Aldrich. A549, L929, and NFS60 cell lines, rats, and mice were obtained from Iranian Genetic Resources Center and Pasteur Institute of Iran, respectively. G‐CSF was purchased from Cinnagen. Fetal bovine serum (FBS) (Cat # 10270) was purchased from GIBCO Invitrogen. Filter papers (Cat # DP 150‐150) and microplates (Cat # 3635) were purchased from Albet and corning, respectively. TSK G2000SWXL (Cat # 0008540), TSK G3000 SWXL (Cat # 0008541), and Guard (Cat # 0008543) were purchased from Tosoh. Quantikine ELISA kit for determination of G‐CSF (Cat # DCS50) was purchased from R&D systems.
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10

Functionalized Fibronectin and Collagen Detection

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Fibronectin from human plasma (lyophilised powder) as a standard, anti-fibronectin antibody produced in rabbit, collagen type IV, purified monoclonal mouse anti-human collagen type IV (Tebu-bio, Le Perray-en-Yvelines, France), bovine serum albumin (BSA), cysteamine hydrochloride, N-ethyl-N’-(3-dimethylaminopropyl) carbodiimide (EDC) (Sigma-Aldrich, Steinheim, Germany), N-hydroxysuccinimide (NHS), (Sigma-Aldrich, Munich, Germany), photopolimer ELPEMER SD 2054, and hydrophobic protective paint SD 2368UV SG-DG (PETERS, Kempen, Germany) were used, as well as absolute ethanol, acetic acid, hydrochloric acid, sodium hydroxide, sodium chloride, sodium carbonate, sodium acetate, (POCh, Gliwice, Poland). HBS-ES buffer pH = 7.4 (0.01 M HEPES, 0.15 M sodium chloride, 0.005% Tween 20, 3 mM EDTA), Phosphate Buffered Saline (PBS) pH = 7.4, carbonate buffer pH = 8.5 (BIOMED, Lublin, Poland, http://www.biomed.lublin.pl) were used as received. Aqueous solutions were prepared using Milli-Q water (Simplicity® Millipore).
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