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27 protocols using alexa fluor 594 goat anti rabbit igg

1

Double Immunofluorescence Staining of Bax, Bcl-2, Akt, and NF-κB

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For double immunofluorescent staining of Bax and Bcl-2, the sections were first covered with 3% BSA at 37°C for 30 min and incubated with a rabbit polyclonal antibody against rat Bax (1 : 50, Abcam, USA) at 4°C for overnight in a wet box. After shaking three times in PBS (pH 7.4) on a decolorized shaker for 5 min each, sections were subsequently incubated with Alexa Fluor 594 goat anti-rabbit IgG (1 : 200 dilution, Abcam, USA) at 37°C for 30 min. After rinsing thoroughly in PBS (pH 7.4), the same procedure was repeated with a rabbit polyclonal antibody against rat Bcl-2 (1 : 100, Cell Signaling Technology, USA) and an Alexa Fluor 488 goat anti-rabbit (1 : 200 dilution, Abcam, USA). For dual staining of Akt and NF-κB, the sections were stained with a rabbit polyclonal antibody against rat Akt (1 : 300, Abcam, USA), a rabbit monoclonal antibody against rat NF-κB p50 (1 : 100, Abcam, USA), an Alexa Fluor 594 goat anti-rabbit IgG (1 : 200 dilution, Abcam, USA), and an Alexa Fluor 488 goat anti-rabbit (1 : 200 dilution, Abcam, USA). Sections were visualized using UV excitation wavelength 330–380 nm, emission wavelength 420 nm; FITC green excitation wavelength 465–495 nm, emission wavelength 515–555 nm; and CY3 red light excitation wavelength 510–560 nm, emission wavelength 590 nm with the Nikon Eclipse Ti-SR (Nikon, Tokyo, Japan) and Nikon DS-U3 (Nikon, Tokyo, Japan).
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2

Immunohistochemistry of POMC Neurons in Transgenic Mice

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B6.Cg-Tg(Mc4r-MAPT/Sapphire)21Rck/J male mice were perfused transcardially via a 23-gauge needle placed in the left ventricle with 100 ml of 0.1 M heparinized PBS, pH 7.4, followed by 100 ml of 4% paraformaldehyde in PBS, and the fixed brains were cryoprotected in 30% sucrose for 48 h at 4C. Coronal hypothalamic sections of 30 μm thickness were prepared on a freezing microtome. Free floating sections were incubated for 15 min in 1% hydrogen peroxide, washed 2 times in PBS, blocked 2 h in 0.3% Triton X-100 and 5% NGS in PBS, before being incubated overnight at 4 °C in rabbit anti-proopiomelanocortin precursor (1:200, Phoenix Pharmaceuticals) in 0.3% Triton X-100 and 5% NGS. Sections were then washed and incubated for 2 h with Alexa Fluor 594 goat anti-rabbit IgG. Sections were washed and incubated overnight at 4 °C in chicken anti-GFP (1:500, Abcam). Sections were washed and incubated in Alex Fluor 488 goat anti-chicken IgG for 2 h. Sections were floated onto superfrost Plus microscope slides (Fisher), and coverslipped with Vectashield (Vector). Tissue sections were digitized using a Zeiss Axioplan fluorescent microscope, and areas of interest were outlined based on cellular morphology.
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3

Triple-Staining for Neurogenesis Quantification

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A triple-staining procedure was implemented for BrdU/DCX/NeuN to allow analyzation through immunofluorescence. The brain sections were incubated overnight at 4°C with the following primary antibodies: rat anti-BrdU (1:200, ab6326, Abcam), mouse anti-NeuN (1:500, ab104224, Abcam) and rabbit anti-DCX (1:500, ab18723, Abcam). The sections were washed in PBS and incubated for 4 h with fluorescent secondary antibodies: Alexa Fluor 488 goat anti-rat IgG to reveal immunoreactivity of BrdU, Alexa Fluor 405 donkey anti-mouse IgG to reveal immunoreactivity of NeuN, and Alexa Fluor 594 goat anti-rabbit IgG to reveal immunoreactivity of DCX, respectively (1:400 for all three antibodies, Abcam). Every sixth coronal section from the adult dentate gyrus was used to assess BrdU+/NeuN+/DCX- and BrdU+/NeuN+/DCX+ positive cells in both hemispheres (10 sections per animal, 3 mice per group). BrdU+/NeuN+/DCX- and BrdU+/NeuN+/DCX+ positive cells were observed and counted under an Olympus BX63 microscope fitted with a ×10 eyepiece lens with a ×40 objective, and their percent distribution in the BrdU positive cells was calculated.
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4

Quantitative DNA Damage Imaging Assay

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Cells were seeded on culture slides. Cells were pulse labeled with 10 µM EdU for 20 minutes prior to treatment. After treatment the cells were fixed, permeabilized and blocked. Foci were detected using anti-53BP1 (Rabbit-anti 53BP1, 1:2000, Novus Biologicals), RPA (Mouse-anti RPA, 1:400, Santa Cruz), yH2AX (Rabbit-anti yH2AX, 1:250, Novus Biologicals), RAD51 (Rabbit, 1:500, Calbiochem), IFN-ß1 (Rabbit-anti IFN-ß1, 1:1000, Cell signaling) or IRF3 (Rabbit-anti IRF3, 1:400, Cell Signaling) followed by Alexa Fluor 488 goat anti rabbit IgG (Cell Signaling, 1:600), AlexaFluor 488 goat anti mouse IgG (Cell signaling, 1:500), AlexaFluor 594 goat anti rabbit IgG (Abcam, 1:600) or AlexaFluor 647 goat anti rabbit IgG (Cell Signaling, 1:600) and mounted (Vector Laboratories). EdU was stained with Alexa Fluor Azide 594 (Life Technologies, 1:500) and nuclei were stained with DAPI. Foci and fluorescence Intensity were quantified manually by capturing fluorescence images using a Zeiss Axioplan 2 fluorescence microscope equipped with a charge-coupled device camera and Axiovision software followed by quantification by Image J software. RPA/yH2AX-Foci were quantified automatically by the Aklides®-system (Medipan). Foci and fluorescence intensities of 100 cells per dose per slide and experiment were quantified.
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5

Immunohistochemistry of Formalin-Fixed Paraffin-Embedded Tissues

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The tumor tissues were fixed in 10% formalin solution to produce paraffin blocks. The samples were sectioned at a 4 μm thickness and deparaffinized. Slides were heated in citrate buffer and 0.2% triton x solution for 30 mins and 10 mins, respectively, and 5% BSA solution was used as a blocking reagent. The primary antibody was incubated overnight at 4 °C, and the secondary antibody (Alexa Fluor 594 Goat anti-rabbit IgG, 1:1000 dilution, Abcam, Cambridge, MA, USA) was incubated for 1 h at room temperature. The slides were mounted with DAPI containing mounting solution (Vectashield, Vector Laboratories, Burlingame, CA, USA).
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6

Multiparametric Flow Cytometry Analysis

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The following fluorophore-conjugated antibodies were purchased from Biolegend: APC anti-granulocyte (RP-1), PE anti-CD45 (OX-1), APC anti-TCRαβ (R73), PE anti-TCRγδ (V65), and PE-Cy7 anti-CD11b (OX-42). Polyclonal APC anti-Arginase-1 antibody (IC5868A) was purchased from Novus Biologicals. Unconjugated polyclonal anti-inducible nitric oxide synthase (iNOS) antibody (ab15323) was purchased from Abcam. For cell surface marker staining, cells were stained with 2 μg/ml each antibody on ice for 30 min. Dead cells were excluded by staining with 1 μg/ml propidium iodide (PI; ebioscience). For intracellular staining, cells were fixed with 4% paraformaldehyde for 15 min and permeabilized with 90% ice-cold methanol for 30 min, followed by incubation with 1:100 diluted anti-Arginase-1 antibody and 10 μg/ml anti-iNOS antibody for 1 h at room temperature. After three washes with PBS, cells were incubated with 1 μg/ml Alexa Fluor® 594 goat anti-rabbit IgG (ab150080, Abcam) for 30 min. For apoptosis assay, cells were stained with PI and Annexin V following the instructions of the APC Annexin V Apoptosis Detection Kit with PI (Biolegend). Cells were then washed with PBS twice and loaded onto either a BD LSR-II flow cytometer (BD Biosciences) for analysis or a BD FACSAria II sorter (BD Biosciences) for sorting.
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7

Immunoblotting and Immunofluorescence Assay

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Anti-CD40 N-terminus (H-120; sc-9096) and anti-CD40 C-terminus (C-20; sc-975) were purchased from Santa Cruz Biotechnology (Dallas, TX); Anti-β-actin (A2228) was from Sigma (St. Louis, MO); anti-DDK mouse mAb (8146), anti-HA rabbit mAb (3724), and anti-STING (3647) were from Cell Signaling Technology (Danvers, MA). Primary antibody binding was visualized using horseradish peroxidase (HRP)-conjugated secondary antibodies specific for mouse or rabbit IgG (Sigma). The anti-Myc (mouse mAb) and anti-HA (rabbit mAb) were used in immunofluorescence microscopy (IFA). Secondary antibodies used for IFA were Alexa Fluor 488 goat anti-mouse IgG and Alexa Fluor 594 goat anti-rabbit IgG (Abcam, Cambridge, MA). DMXAA, 2’3’-cGAMP, Pam3CSK4, CpG (ODN 2395) were from InvivoGen. Poly(I:C), LPS, Poly(dAdT) were from Sigma. P. falciparum GPI was prepared as described [68 (link)].
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8

Ki67 and Nestin Double Staining Protocol

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In the Ki67 and Nestin staining stage, sections were incubated with a rabbit anti-Ki67 antibody (1:200, 9129, CST) and mouse anti-Nestin (1:200, ab6142, Abcam) at 4°C overnight. After washing in TBS with 0.01% Tween-20, the sections were incubated with AlexaFluor® 488 goat anti-mouse IgG (1:500, ab150133, Abcam) and AlexaFluor® 594 goat anti-rabbit IgG (1:500, ab150080, Abcam) at 37°C for 2 h. The other steps and parameters were consistent with the aforementioned staining except for HCL treatment and borate buffer neutralization similar to BrdU/DCX labeling. The number of Ki67/Nestin double-positive cells was recorded.
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9

Immunofluorescence Staining of PATZ1 and p53

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The cells were grown on cover glasses and fixed in 4% paraformaldehyde/PBS for 30 min and 0.1% Triton X-100 for 30 min. After treatment with 1% bovine serum albumin (BSA), they were exposed to primary antibodies against PATZ1 (#ab154025, Abcam, Cambridge, UK) or p53 (#sc-6243, Santa Cruz Biotechnology, Dallas, TX, USA). Subsequently, the cells were treated with Alexa Fluor 488 goat anti-rabbit IgG (Abcam) for PATZ1 or Alexa Fluor 594 goat anti-rabbit IgG (Abcam) for p53 and Prolong Gold Antifade Reagent with DAPI (Life technologies, Carlsbad, CA, USA). Fluorescence was observed by using a fluorescence microscope (Keyence, Osaka, Japan).
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10

Immunofluorescence Analysis of CCDC109B

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To assess the distribution and expression levels of CCDC109B, NHA and glioma cells were seeded onto glass slides. The cells were then washed twice with PBS and fixed with 4% paraformaldehyde for 20 min at room temperature. Cells were rinsed with PBS, permeabilized with 0.5% Triton X-100 (Solarbio) for 15 min, and blocked with 10% normal goat serum for 60 min at room temperature. Cells were stained with primary antibody against CCDC109B (1:100) at 4 °C overnight, followed by incubation with Alexa Fluor 594 goat anti-rabbit IgG (Abcam, UK; 1:800) for 1 h at room temperature. Cell nuclei were stained with DAPI (Sigma-Aldrich, Germany) at 37 °C for 10 min, and images were obtained with confocal microscopy (LSM780, Zeiss).
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