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7 protocols using anti cdk6

1

Western Blot Analysis of Cell Cycle Regulators

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Harvested cells were lysed, and the total protein was quantitated with the bicinchoninic acid (BCA) kit (Beyotime Biotechnology, Shanghai, People’s Republic of China). An equivalent of 40 μg protein extract was resolved using sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride (PVDF) membranes. Then, the blots were blocked with 5% milk, followed by incubation with the respective antibodies. The immunoreactive bands were detected using an enhanced chemiluminescence kit (Thermo Fisher) and visualized with the Tanon-4500 Gel Imaging System (Tanon, Shanghai, People’s Republic of China). Tubulin, H3, and LaminB1 were used as internal controls. The antibodies used were as follows: anti-CDKL1 (1:1,000, Abcam, Cambridge, UK); anti-CDK4, anti-CDK6, anti-cyclinD1, and anti-LaminB1 (1:2,000, Proteintech, Rosemont, IL, USA); horseradish peroxidase (HRP)-conjugated anti-mouse and anti-rabbit secondary antibodies (1:10,000, Abbkine, Wuhan, Hubei, People’s Republic of China); and anti-H3, anti-P15, anti-Rb, anti-phospho-Rb (Ser807/811), and anti-Phospho-Rb (Ser780) (1:2,000, Cell Signaling Technology, Danvers, MA, USA).
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2

Evaluating Tumour Biomarkers by IHC

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According to the manufacturer's instructions, the tumour tissues were first dewaxed and rehydrated using xylene and ethanol. Then, high-pressure heat was used for antigen retrieval. Next, anti-CDK6, anti-cyclin D1, anti-MMP-2, anti-MMP-9, anti-Ki67 (Proteintech, Wuhan, China), anti-VEGF (Boster) and anti-E-cadherin (CST, Danvers, MA, USA) were added, respectively. Finally, all sections were dehydrated, cleared, mounted and visualised with a diaminobenzidine-based colorimetric method and analysed with the Image Pro Plus 6.0 software (Media Cybernetics Inc.). The immunohistochemistry (IHC) index was defined as the average integral optical density.
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3

Western Blot Antibody Screening Protocol

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Western blot assays were conducted as previously described.8 The associated primary immunoblotting antibodies were as follows: anti‐GAPDH, anti–E‐cadherin, anti–N‐cadherin, anti‐Vimentin, anti‐CDK6, anti‐CCND1, anti‐CDK4, anti‐NOP14, anti‐MMP9, anti‐MMP2, anti‐E2F1, anti‐MET, anti‐Parp‐1, (Proteintech Group), anti‐Caspase 3, anti‐DNMT3B (Cell Signaling Technology) and anti‐SP1 (Santa Cruz Biotechnology).
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4

Quantitative Western Blot Analysis of Cell Signaling

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Total proteins were extracted from cells utilizing Radioimmunoprecipitation Assay (RIPA) lysis buffer (Solarbio, China). Protein concentrations were then ascertained through the Bicinchoninic Acid (BCA) protein assay (Solarbio, China). Electrophoresis was performed on SDS–polyacrylamide gels, followed by transfer to PVDF membranes (Millipore, Carrigtwohill, Ireland). The membranes were then blocked with skim milk and incubated overnight at 4 °C with primary antibodies. After washing, a secondary antibody was applied and incubated at room temperature for 2 h. The antibodies used were anti-BLM (1:900 dilution; Bios, China), anti-Bax (1:5,000 dilution; Proteintech, USA), anti-PCNA (1:3,000 dilution; Proteintech, USA), anti-CDK6 (1:5,000 dilution; Proteintech, USA), anti-Cyclin D1 (1:5,000 dilution; Proteintech, USA), anti-Bcl-2 (1:2000 dilution; Proteintech, USA), anti-Cyclin E1 (1:1000 dilution; Proteintech, USA), anti-CDK2 (1:1000 dilution; Proteintech, USA), GAPDH (1:1000 dilution; Proteintech, USA), and goat-anti-rabbit, goat-anti-mouse secondary antibody (1:1,0000 dilution; Proteintech, USA). Subsequently, the results were quantified and images were processed using ImageJ software.
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5

Protein Expression Analysis in A549 Cells

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The total protein was extracted from A549 cells using RIPA buffer containing protease inhibitors and separated through Sodium dodecyl sulfate‐polyacrylamide gel electrophoresis. Then, proteins were transferred to a PVDF membrane. After blocked with 5% fat‐free milk for 1 hour, the sample was incubated with primary antibodies for 1 hour and then with secondary antibodies for 1 hour. The following primary antibodies, namely anti‐Syncytin 1 (1:500), anti‐SP1 (1:1000) anti‐Active‐Caspase3 (1:1000), and anti‐Active‐Caspase9 (1:1000) were purchased from Abcam; anti‐Cyclin D1 (1:1000), anti‐Nusap1 (1:1000), anti‐CDK6 (1:1000), anti‐CDK4 (1:1000), anti‐Bcl2 (1:1000), anti‐Bax (1:1000), anti‐β‐catenin (1:1000), anti‐Vimentin (1:1000), anti‐E‐cadherin (1:1000), anti‐N‐cadherin (1:1000), anti‐P70 (1:1000), and anti‐GAPDH (1:5000) were purchased from Proteintech Group; anti‐p‐AKT (1:1000), anti‐p‐mTOR (1:1000), and anti‐p‐Erk1/2 (1:1000) were purchased from Cell Signaling Technology.
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6

Western Blot Analysis of Protein Expression

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Total proteins were extracted by lysing cells in 6‐well plate with 60 μL RIPA buffer supplemented with protease inhibitors (#G2006, Wuhan Goodbio Technology) and phosphatase inhibitors (#G2007, Wuhan Goodbio Technology) and quantified by BCA protein assay kit (#P0011, Beyotime). One microgram of proteins was separated by 10% SDS‐PAGE and transferred to PVDF membrane (#IPVH00010, Merck Millipore). The membrane was blocked with 5% Non‐Fat Milk (#A600669, Sango Biotech) for 1 hour at room temperature and incubated with specific antibody at 4°C overnight followed by HRP‐conjugated secondary antibody incubation for 1 hour at room temperature. Images of membrane with proteins were taken with imager (Bio‐rad ChemiDoc MP, Bio‐rad). The antibodies are recorded: anti‐GAPDH (#60004‐1‐lg, Proteintech), anti‐YTHDF2 (#24744‐1‐AP, Proteintech), anti‐E‐cadherin (#20874‐1‐AP, Proteintech), anti‐N‐cadherin (#66219‐1‐AP, Proteintech), anti‐VIMENTIN (#10366‐1‐AP, Proteintech), anti‐MMP9 (#10375‐2‐AP, Proteintech), anti‐MMP2 (#10373‐2‐AP, Proteintech), anti‐SNAIL (#13099‐1‐AP, Proteintech), anti‐CDK6 (#14052‐1‐AP, Proteintech), anti‐CCND1 (#26939‐1‐AP, Proteintech), anti‐CDK4 (#11026‐1‐AP, Proteintech), anti‐KLF4 (#12173S, Cell Signaling Technology), anti‐SLUG (#C1967, Cell Signaling Technology), anti‐METTL3 (#ab195352, Abcam) and anti‐SETD7 (#ab14820, Abcam).
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7

Cellular Protein Isolation and Western Blot

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To isolate cellular proteins, cells were lysed with RIPA lysis buffer (Beyotime, Jiangsu, China), protein concentration was quantified using a TaKaRa BCA Protein Assay Kit (Takara Bio, Kyoto, Japan). Standard western blot procedures were performed as described previously (16 (link)), and the immunoreactive signal was exposed by an Odyssey Infrared imaging system (LI-COR Biosciences, Lincoln, NE, USA). The specific primary antibodies used were as follows: anti-CDK6 (1:500, #14052-1-AP, ProteinTech, Wuhan, China), anti-Cyclin E2 (1:1000, #4132, Cell Signaling Technology, MA, USA) anti-β-actin (1:1,000, #81178, Santa Cruz Biotechnology, CA, USA).
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