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14 protocols using pmirglo luciferase reporter

1

Luciferase Assay for miRNA-mRNA Interactions

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A total of 3 × 104 cells were seeded into each well of the 96-well plates. The 3′-UTR sequences of MIAT or FOXM1 encompassing the miR-149-5p wild-type or mutant binding sites were synthesized. The sequences were inserted into pmirGLO luciferase reporters (Promega, Madison, WI, USA) between Sacl and Sall restriction sites, respectively. The binding sites for miR-149-5p were mutated by Gene Mutation Kit (Takara, JAPAN) to generate the mutant MIAT or FOXM1 3′-UTR. The plasmids, including 3′-UTR of wild-type or mutant sequences from MIAT or FOXM1 and miRNA mimic were co-transfected into NSCLC cells using Lipofectamine 2000 (Invitrogen, Foster city, USA). After incubation for 48 h, a dual-luciferase reporter assay (Promega, Madison, WI, USA) was used to test the firefly and Renilla luciferase activities. Results were presented as relative luciferase activities of Renilla, which were normalized to the activity of firefly luciferase.
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2

Luciferase Reporter Assay for miRNA-Transcription Factor Interactions

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The circANKS1B or USF1 3′ UTR sequences containing wild-type or mutant miR-148a/152-3p binding sites were synthesized and respectively inserted into pmirGLO luciferase reporters (Promega) between Sacl and Sall restriction sites, after which cotransfected with miR-148a/152-3p mimics or control mimics into breast cancer cells using Lipofectamine 2000. For the promoter of TGF-β1 luciferase reporter assay, the wild-type or mutant full-length TGF-β1 promoter construct and six truncation constructs were respectively inserted into pGL3-basic vectors (Promega) between Sacl and Xhol restriction sites, and then cotransfected with USF1 overexpression vector and pRL-TK into breast cancer cells by Lipofectamine 2000. After 48 h, the luciferase activities were tested by the dual-luciferase reporter assay kit (Promega).
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3

Luciferase Assay for miR-339-3p Targets

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The circDOCK1 or IGF1R 3′ UTR sequences containing wild-type or mutant miR-339-3p binding sites were synthesized and respectively inserted into pmirGLO luciferase reporters (7350 bp, Promega, Madison, WI, USA) between Sacl and Sall restriction sites, after which cotransfected with miR-339-3p mimics or control mimics into OS cells using Lipofectamine 2000. After the cells were incubated for 48 h, luciferase activity was measured following the instructions (Promega). All experiments were repeated at least three times.
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4

Dual Luciferase Assay for miR-320a Targets

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SOX4 3′‐UTR (UACACAAUCUGCCUUAGCUUUAA) or TMPO-AS1 3′‐UTR (CCCAGCTTGAGAAGCAGCTTTC) harboring binding site among miR-320a was cloned into pmirGLO luciferase reporter (Promega, Madison, WI, USA) to generate pmirGLO-SOX4-wt or pmirGLO-TMPO-AS1-wt, respectively. The mutated SOX4 (UACACAAUCUGCCUUUCUCCGUA) or TMPO-AS1 binding sequence (CCCAGCTTGAGAAGAGCGAAAC) was constructed using the QuikChange Site‐Directed Mutagenesis Kit (Stratagene, USA) to construct pmirGLO-SOX4-mut and pmirGLO-TMPO-AS1. SUNE1 or C666-1 cell was cotransfected with miR-320a mimics and pmirGLO report. After 24 h, the luciferase activity was measured by Luciferase Reporter Assay Kit (Promega).
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5

Luciferase Assay for miR-581 Binding

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The wild types of SMAD7-3′UTR, including the binding bite of miR-581 and the site-directed mutant type, were synthesized and inserted into the pmiR-GLO™ luciferase reporter plasmid (Promega, Madison, WI, USA). The WT, or MUT vector, was co-transfected with miR-581 mimics or negative controls in 24-well plates using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA). After 24 h, the cells were harvested and assayed by a Dual-Luciferase Reporter Assay (Promega, Madison, WI, USA) according to the manuals.
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6

Ox-LDL Regulates SNHG1-miR-556-5p Axis

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The HUVEC cells underwent 24 h of treatment with 50 μg/ml of ox-LDL that was harvested for luciferase assay and RIP assay. In order to produce the SNHG1-WT, vectors of pmirGLO luciferase reporter (Promega, Madison, WI) were utilized to insert the sequence of SNHG1 flanking the complementary sequence encompassing miR-556-5p element. At the same time, SNHG1-Mut was acquired by the mutation of the sequences complementary to the seed region of miR-556-5p. Besides, the 3′UTR sequences of GNAI2 and PCBP1 as well as their mutated sequences without miR-556-5p binding sites were acquired and inserted to pmirGLO vectors for luciferase assays. After the cotransfection was completed, luciferase reporter system (Promega) was used to analyze the luciferase activity of indicated HUVEC cells. With regard to RIP assay, HUVEC cells were lysed in RIP lysis buffer containing proteinase inhibitors and RNase inhibitors. Magna RNA immunoprecipitation kit (Millipore, Bedford, MA) was applied to capture RNAs that could be precipitated by anti-Ago2 in different HUVEC cells. Then qRT-PCR was applied to estimate the enrichment of precipitated RNAs.
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7

Validation of miR-485-5p-YAP1 mRNA Interaction

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The interaction between miR-485-5p and YAP1 mRNA was tested by dual luciferase reporter experiment. The YAP1 mRNA 3UTR regions containing wide-type (WT) or mutant (MUT) binding site of miR-485-5p was cloned into pmirGLO luciferase reporter (Promega, Madison, WI, USA) to construct YAP1-WT and YAP1-MUT reporter plasmids. The cells were co-transfected with YAP1-WT or YAP1-MUT and miR-485-5p mimic or miR-NC as well as Renilla luciferase (Rluc) control plasmids. After 48 h, the Dual-Luciferase Reporter Assay Kit (Promega, E1910) was used to detect luciferase activity according to the manufacturer’s instructions. The relative luciferase activity was normalized to that of Renilla luciferase.45 (link)
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8

miR-802 Binding Site Analysis in AMPK Subunits

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The 3’ UTR regions harboring the miR-802 binding site of human AMPKα1(310 bp, +2569/+2878) and mouse Ampkβ1 (249 bp, +801/+1059) were amplified from genomic DNA isolated from human HepG2 (ATCC, HB-8065) and mouse Hepa1c1c7 (ATCC, CRL-2026) cells, respectively. The amplified fragments were inserted into pmirGLO luciferase reporter (Promega, E1330) and mutations were introduced in the miR-802 site by site-directed mutagenesis (Agilent, 200521). Cells were transfected with 200 ng of luciferase reporter plasmids, 200 ng of β-galactosidase plasmid, and 1–50 nM precursor-miR-802, and harvested 2 days later. The values for luciferase activities were normalized to β-galactosidase activities.
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9

Quantifying miRNA-circRNA Interactions

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The wild-type (WT) sequences containing the predicted binding sites of miR-502-3p and miR-4436a and circPDSS1, or the mutant (Mut) sequences were cloned into the pmirGLO luciferase reporter (Promega, E1330). Reporter plasmid and Renilla luciferase (hRlucneo) control plasmid were co-transfected into cells with either microRNA mimics or miR-NC using Lipofectamine 3000 reagent. 48 h after transfection, the relative luciferase activities were measured using Dual-Luciferase Reporter Assay Kit (Promega, E1910) on a luminescence microplate reader (Infinite 200 PRO; Tecan). The relative firefly luciferase activity in the reporter plasmid was normalized to that of Renilla luciferase (hRlucneo) control plasmid.
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10

Luciferase Assay for HMMR-AS1 and HMGA2 3'-UTR

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Luciferase reporter assay was to proceed as previously described [8 (link)]. The wild-type or mutated HMMR-AS1 fragment and HMGA2 3’-UTR fragment were constructed into the PmirGLO luciferase reporter (Promega, USA). The reporter plasmid and Renilla luciferase (hRlucneo) control plasmid were co-transfected into cells with either miR-627-3p mimic or miR-NC in a 12-well plate (1 × 10^5 cells/well) using Lipofectamine 3000 reagent (Invitrogen, USA). Forty-eight-hour post transfection, the relative luciferase activities were measured by Dual-Luciferase Reporter Assay Kit (Promega, USA) on a luminescence microplate reader.
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