The largest database of trusted experimental protocols

14 protocols using phosphorylated nf κb

1

Quantifying TLR2 and NF-κB Activation

Check if the same lab product or an alternative is used in the 5 most similar protocols
TLR2 and phosphorylated NF-κB proteins were isolated from the cytoplasmic extraction of Pam3CSK4-stimulated Raw264.7 cells using Proprep buffer, and subsequently detected using antibodies specific for TLR2 (1:2000, Cell Signaling Technology, Danvers, MA, USA), phosphorylated NF-κB (1:1000, Cell Signaling Technology, Danvers, MA, USA), and β-actin (1:5000, Santa Cruz Biotechnology, Dallas, TX, USA) as described previously [29 (link)]. Cultured cells were pretreated with 20 µM of CU-CPT22 and phloretin for 1 h, and then stimulated with 1 µg/mL Pam3CSK4. We measured the concentration of protein on a Nanodrop spectrophotometer (Thermo Scientific, Pittsburgh, PA, USA; range: 0.06–820 mg/mL bovine serum albumin). β-actin was used as the control in the Western blot. ImageJ software (National Institutes of Health, Bethesda, MD, USA) was used to quantify the relative intensities of the protein bands detected using these antibodies.
+ Open protocol
+ Expand
2

Protein Extraction and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lysis buffer was used to extract total protein from colon tissues, and BCA Protein Assay Kit (Applygen Technologies Inc., Beijing, China) was put into use to detect protein concentrations. Primary antibodies including β-actin (1:1000), NF-κB (1:1000) and phosphorylated (p)-NF-κB (1:1000) were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). In addition, the primary antibody of Hsp70 (1:1000) was obtained from Abcam (Cambridge, UK). Blots were incubated with horseradish peroxidase-coupled secondary antibody, and were finally quantified by ImageJ software (NIH, Bethesda, MD, USA).
+ Open protocol
+ Expand
3

Western Blot Analysis of Immune Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein were extracted separately from ICC cells. A separation gel and concentrated gel were prepared, and the proteins were separated by electrophoresis and then transferred to membranes. The membranes were blocked with 5% skim milk and incubated with antibodies against MyD88 (1:1,000; Santa Cruz Biotechnology), IRAK4 (1:1,000), TRAF6 (1:1,000), NF-κB (1:1,000), phosphorylated (p)-NF-κB (1:1,000) (all from Cell Signaling Technology, Danvers, MA, USA), GAPDH (1:2,000; Proteintech, Hubei, China) and washed after incubation. Then, the membranes were incubated with goat anti-rabbit/mouse secondary antibody (1:3,000; MultiSciences, Hangzhou, China) at room temperature for 1 h. After being washed, the poly (vinylidene difluoride) membrane was placed in enhanced chemiluminescence reagent and then scanned.
+ Open protocol
+ Expand
4

Protein Expression Analysis in VSMCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
VSMCs were harvested and total proteins were isolated and quantified by the BCA method. Protein samples were resolved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (10%) and transferred onto a nitrocellulose membrane. After blocking in 3% nonfat milk for 30 min, the membrane was incubated with primary antibodies against TLR4 (Abcam), NF-κB (Cell Signaling), phosphorylated (p)-NF-κB (Cell Signaling), Runx2 (Abcam), BMP2 (Abcam), SM22α (Abcam), and β-actin (Abcam), followed by incubation with corresponding horseradish peroxidase-labeled secondary antibodies for 1 h. The bands were visualized by using an enhanced chemiluminescence system (Pierce, Rockford, IL, USA). The expression level of each protein was normalized by that of β-actin.
+ Open protocol
+ Expand
5

Western Blot Analysis of Cell Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
WB analysis was performed as previously described.51 (link) Cells were lysed using the M-PER Mammalian Protein Extraction Reagent (ThERMO Scientific), and sodium dodecyl sulfate-polyacrylamide gel electrophoresis was performed. The following antibodies were used: HMGB1 (1:1000, ab79823, Abcam), HSP70 (1:1000, ab181606, Abcam), Calreticulin (1:1000, ab92516, Abcam), RAGE (1:1000, ab216329, Abcam), phosphorylated NF-κB [1:1000, 3033, Cell Signaling Technology (CST)], NF-κB (1:1000, 8242, CST), phosphorylated Akt (1:1000, 4060S, CST), Akt (1:1000, 4691S, CST), phospho-MAPK Family Antibody Kit (1:1000, 9910, CST), a MAPK Family Antibody Kit (1:1000, 9926, CST), β-Actin (1:1000, 4970S, CST) and GAPDH (1:1000, 60004-1-Ig; Proteintech). Proteins were visualized by using an ECL kit (4AW011; purchased from 4A Biotech Co., Ltd).Images were prepared using ChemiDoc XRS + system (BioRad, China) and quantification analyses were performed by Bio-Rad Image Lab software (BioRad, China).
+ Open protocol
+ Expand
6

Adiponectin-Mediated Cell Signaling Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dulbecco's modified Eagle's medium (DMEM) and fetal bovine serum (FBS) were obtained from Thermo Scientific, Waltham, MA, USA. Hank's balanced salt solution (HBSS), rat recombinant globular adiponectin (gAd), Z-VAD-FMK, necrostatin-1, dihydroethidium, and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide kit were purchased from Sigma-Aldrich, St. Louis, MO, USA. Antibodies against cleaved caspase-3, caspase-3, RIP1, RIP3, NF-κB, p38MAPK, phosphorylated-NF-κB, phosphorylated-p38MAPK, Bcl-2, Bax, and GAPDH as well as HRP-conjugated anti-rabbit IgG antibody were obtained from Cell Signaling Technology, Inc., Danvers, MA, USA.
+ Open protocol
+ Expand
7

Evaluating Anti-Inflammatory Effects of Catalpol on Diesel Exhaust Particles-Induced Toxicity

Check if the same lab product or an alternative is used in the 5 most similar protocols
The measurement of cytochrome C (R&D Systems, Minneapolis, MN, USA), cleaved caspase C (R&D Systems, Minneapolis, MN, USA) and phosphorylated NF-κB (Cell Signalling Technology, Danvers, MA, USA) in heart homogenates, obtained from mice i.t. instilled with DEPs or saline with or without catalpol treatment, were obtained using commercially available ELISA kits. Moreover, protein expressions for phosphorylated NF-κB and phosphorylated NF-κB inhibitor α (IκBα) were further measured using the Western blotting technique, as previously reported [20 (link),26 (link),27 (link)].
+ Open protocol
+ Expand
8

Protein Extraction and Immunoblotting from Liver Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins from freshly frozen liver tissues were extracted, segregated through electrophoresis, and transferred onto nitrocellulose membranes (Bio-Rad Laboratories, Hercules, CA, USA) [27 (link)]. Membranes were incubated with primary antibodies against CD63 (Proteintech, Rosemont, IL, USA), CD9 (Proteintech), phosphorylated-NF-κB (Cell Signaling Technology, Danvers, MA, USA), NF-κB (Cell Signaling Technology), HIF-1α (iReal Technology, Hsinchu, Taiwan), proapoptotic BAX (Abcam) [27 (link)], antiapoptotic Bcl-2 (Cell Signaling) [27 (link)], proapoptotic cleaved Caspase-3 (Cell Signaling) [27 (link)], or actin (internal standard; Sigma-Aldrich). Bound antibodies were detected through chemiluminescence (ECL Plus kit; Amersham). Band density was measured using densitometry (ImageJ).
+ Open protocol
+ Expand
9

Inhibition of NF-κB and PERK in Cell

Check if the same lab product or an alternative is used in the 5 most similar protocols
Estrogen and rapamycin were purchased from Sigma-Aldrich. The NF-κB inhibitor, JSH-23 was purchased from CalBiochem. The PERK inhibitor, GSK797800 was obtained from Toronto Research Chemicals. The STAT3 inhibitor, Stattic was purchased from Tocris. For western blotting, antibodies against NF-κB, phosphorylated-NF-κB, phosphorylated-IκBα, total-IκBα, phosphorylated-eIF2α, total-eIF2α, PERK, and PARP were purchased from Cell Signaling Technology. NF-κB, C/EBPβ, PERK and scrambled siRNAs were obtained from GE Dharmacon.
+ Open protocol
+ Expand
10

Analysis of Adipocyte Differentiation

Check if the same lab product or an alternative is used in the 5 most similar protocols
E-GS was obtained from Sigma–Aldrich, Inc. (St. Louis, MO, USA). Oil Red O was purchased from Sigma–Aldrich, Inc. DMEM, penicillin, gentamicin, and FBS were acquired from Hyclone Laboratories, Inc. (Logan, UT, USA). Recombinant human interleukin (IL)-1β was obtained from R&D Systems (Minneapolis, MN, USA). Anti-CCAAT-enhancer-binding protein (C/EBP) α and β, anti-sterol regulatory element-binding protein-1 (SREBP-1), anti-peroxisome proliferator activator gamma (PPARγ), and anti-β-actin antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against extracellular signal-regulated kinase (ERK), phosphorylated ERK, Akt, phosphorylated Akt, c-Jun NH(2)-terminal kinase (JNK), phosphorylated JNK, NF-κB, phosphorylated NF-κB, p38, and phosphorylated p38 were all purchased from Cell Signaling Technology (Beverly, MA, USA). Phosphorylated levels of proteins were normalized to their respective total protein levels for each phosphorylation analysis.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!