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Nanoassemblr benchtop instrument

Manufactured by Precision Nanosystems
Sourced in Canada

The NanoAssemblr Benchtop instrument is a laboratory device designed for the formulation and production of lipid nanoparticles. It provides a controlled environment for the mixing and nanoprecipitation of solutions to create nanoparticles with precise size and uniformity.

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8 protocols using nanoassemblr benchtop instrument

1

Knockdown of Endogenous IGF-1 in DRG Neurons

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Lipid nanoparticle–siRNA (LNP–siRNA) was used to knock down endogenous IGF-1 in DRG neurons. For this purpose, a mixture of siRNA-29, 5′-GCUGAAGCCUACAAAGUCAtt-3′ (siRNA ID: s127929, Thermo Scientific, Pittsburgh, PA, USA) and siRNA-31, 5′-GAAGUACACUUGAAGAACAtt-3′ (siRNA ID: s127931, Thermo Scientific, Pittsburgh, PA, USA) specific to rat IGF-1, or a scrambled siRNA (Cat #:4635, Thermo Scientific, Pittsburgh, PA, USA) as a negative control was used. All LNP–siRNA, LNP–GFP (AG13105-CH, Sino Biological Inc., Beijing, China), LNP–IGF-1 (HG29626-NH, Sino Biological Inc., Beijing, China) and LNP–CEBPβ (Addgene, USA; plasmid # 12557) overexpressing plasmids were formulated using Neuro9 (Precision NanoSystems, Vancouver, BC, Canada) transfection kit following microfluidics mixing method using the NanoAssemblr Benchtop instrument (Precision NanoSystems, Vancouver, BC, Canada) following supplied protocol. See Supplementary Information for more details.
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2

mRNA Lipid Nanoparticle Formulation and Characterization

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The synthesized RBD-mRNA was encapsulated with lipid nanoparticles (LNPs) as described below (Tai et al., 2020 (link); Wang et al., 2022 (link)). Specifically, PNI Formulation Buffer with or without the synthesized mRNA was combined with GenVoy-ILM (lipid mixture) (Precision Nanosystems) at 3:1 ratio using NanoAssemblr Benchtop Instrument (Precision Nanosystems). The LNP-formulated mRNA was concentrated using 10 kDa Amicon Ultra-15 Centrifugal Filters (EMD Millipore) and stored at 4 °C until use. The endotoxin level (<1 EU/ml) of each LNP-encapsulated mRNA was measured using Chromogenic LAL Endotoxin Assay Kit (GenScript), and related particle size was measured using DynaPro NanoStar II Light Scattering Detector (WYATT Technology).
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3

Lipid Nanoparticle Formulation and Characterization

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LNPs were prepared using NanoAssemblr Benchtop Instrument (Precision Nanosystems Inc., Vancouver, Canada) according to a previously described method (26 (link)). The lipid components (ionizable lipid, DOPE, cholesterol, and PEG lipid at 26.5:20:52:1.5 molar ratio) were dissolved in ethanol, and RNAs (Cas9 mRNA/sgRNA at 1:1 weight ratio) were dissolved in 10 mM citrate buffer (pH 3). The final ionizable lipid:RNA weight ratio was 10:1, and the final volume ratio was 1:3. Then, LNPs were formulated by microfluidic mixing of the prepared solutions at a 12 ml/min flow rate. The resulting LNPs were dialyzed against 1X phosphate-buffered saline (PBS) with 3500–molecular weight cutoff dialysis cassettes (Life Technologies) for 16 hours to exchange buffer. To characterize the prepared LNPs, dynamic light scattering was used to confirm the size, PDI, and zeta potential of LNPs. The encapsulation efficiency of RNAs was measured by Quant-iTTM Ribogreen Assay (Life Technologies).
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4

Optimized Lipid Nanoparticle Formulations

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All LNPs were prepared by combining appropriate volumes of cationic lipid (DODMA alone (DODMA-LNPs)or a combination of DODMA, DODAP and DOTAP lipids (Hydrid LNPs); 50 mol% unless otherwise stated), helper lipid (DOPE; 11.5 mol%), PEGylated lipid (PEG-DMPE; 1.0 mol%; unless otherwise stated), and cholesterol (37.5 mol%; unless otherwise stated) in anhydrous ethanol with plasmid DNA in 25 mM sodium acetate (pH 4.0) at a nitrogen to phosphorus (N/P) ratio of 6:1 using the NanoAssemblr Benchtop instrument and microfluidic cartridges (Precision Nanosystems, Vancouver, BC, Canada) set to a combined flow rate of 9 ml/min [flow rate ratio of 3 (DNA/aqueous) to 1 (ethanol/lipid)]. The total lipid concentration was maintained at 14.68 mM and the cholesterol content was varied to offset changes in cationic lipid or PEGylated lipid content. The LNP formulations were diluted with PBS (pH 7.4, without magnesium and calcium; Gibco) and subjected to three sequential diafiltration steps using Amicon Ultra centrifugal filters with a nominal molecular weight limit of 10 kDa (Millipore, Etobicoke, ON, Canada)5 (link).
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5

Hydroxychloroquine-loaded PLGA Nanoparticles

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Poly(lactic-co-glycolic acid) (~22 kDa), acid terminated, with differing ratios of lactic to glycolic acid 50:50 (PURAC 5004A) was kindly donated by Corbion (Amsterdam, Noord-Holland). Polyvinyl alcohol (PVA), and hydroxychloroquine sulfate were purchased from Thermo Fisher Scientific (New Jersey, USA). All other chemicals were reagent grade and used without purification. Poly(lactic-co-glycolic acid) particles were prepared using a NanoAssemblr Benchtop Instrument (Precision NanoSystems, Vancouver, BC, Canada) as specified. RAW 264.7 macrophage cells were obtained from ATCC (Manassas, VA). Dulbecco’s Modified Eagle’s Medium/Nutrient Mixture F-12 Ham media, heat inactivated American grade fetal bovine serum (FBS) and penicillin/streptomycin were purchased from Millipore Sigma (Burlington, MA).
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6

Liposome Formulation and Characterization

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The required amount of individual lipids according to the desired composition (Table 2) were dissolved in anhydrous ethanol and in a mixture of EtOH:DMSO (1:1) for composition 2,3,4 and 1, respectively at 4 mg/ml. The organic and aqueous phase (Milli-Q water) were rapidly mixed using the NanoAssemblr Benchtop instrument (Precision NanoSystems, Canada) at defined Flow Rate Ratios (FRR) 1:3 and Total Flow Rate (TFR) 7 ml/min to form unilamellar liposomes 1 mg/ml of lipid. During the mixing process, the temperature was controlled using NanoAssemblr Benchtop Heating Controller accessory (Precision NanoSystems, Canada). For preparation of liposomes containing DSPC, the temperature was set to 65 °C, respectively. NanoAssemblr instrument setting is presented at Fig. 9.

Lipid compositions of the liposome formulation.

lipidcomposition (molar % of lipid)
12345
18:0 PE DTPA (Gd)5
DMPC100
SOPC100
DSPC(90–50)
EPC6570(100–50)
Cholesterol3030(10–50)(0–50)

NanoAssemblr instrument settings with precise measurement of the temperature in the mixing cartridge and Zetasizer Ultra for size distribution measurement (A), Detail of microfluidic mixing “herring bone” structure in the NanoAssemblr Microfluidic Cartridge (B).

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7

Formulation and Characterization of Ionizable Lipid Nanoparticles for siRNA Delivery

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Ionizable LNPs were kindly provided by EnhancedBio Inc. (Seoul, South Korea). LNPs were prepared using the NanoAssemblr Benchtop Instrument (Precision Nanosystems Inc., Vancouver, Canada) according to a previously described method [28 (link)]. The lipid components (ionizable lipid, distearoylphosphatidylcholine, cholesterol, and polyethylene glycol lipid at a molar ratio of 42.5:13:43.5:1.0) were dissolved in ethanol, and HPV16 E6/E7 siRNAs (target sequence: 5’-GAC CGG UCG AUG UAU GUC UUG-3’) were dissolved in 50 mM sodium acetate. The final weight ratio of ionizable lipid to RNA was 7.5:1, and the final volume ratio was 1:3. LNPs were formulated by microfluidic mixing of the prepared solutions at a flow rate of 12 ml/min. The resulting LNPs were dialyzed against 1X phosphate-buffered saline (PBS) using dialysis cassettes with a 10,000 molecular weight cutoff (Life Technologies, CA, USA) for 16 hours to exchange the buffer. To characterize the prepared LNPs, dynamic light scattering was used to confirm their size, polydispersity index (PDI), and zeta potential. The encapsulation efficiency of RNAs was measured using the Quant-iTTM Ribogreen Assay (Life Technologies, CA, USA).
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8

Microfluidic Synthesis of Hempseed Oil Nanoemulsions

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A NanoAssemblr Benchtop instrument (Precision NanoSystems) was used to prepare the O/W nanoemulsions. The disperse, organic phase was comprised of an ethanolic solution containing surfactants (Tween 80: Span 80; 2.3:1 v/v) with different concentrations of hempseed oil. Deionized water was used as a continuous aqueous phase. Instrument parameters total flow rate and flow rate ratio (aqueous: organic) were varied in the ranges of 2–12 mL/min and 1:1–4:1, respectively, in order to determine their effect on emulsion droplet size and stability. Ethanol was removed by dialysis (10 kDa MWCO dialysis bags) in deionized water at room temperature over 24 h and then samples were stored at 4 °C post dialysis. The displacement of organic and aqueous phases in a microfluidic mixer is shown schematically in Fig. 1.

Controlled solvent displacement in a microfluidic mixer: (1) Organic (ethanol) and aqueous (PBS) phases enter the channel under laminar flow without mixing; (2) Microscopic features in the channel cause fluid streams to mix in a controlled fashion; (3) Intermingling of the phases increases through the mixer; (4) Fluids emerge, mixed as a stable emulsion.

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