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19 protocols using transwell cell culture plate

1

Co-culture of Monocytes and SPIO-BMSCs

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Primary monocytes were isolated and cultured from the spleen in the SD rats (the culture of primary monocytes is shown in Supplement 1), with the cell isolation kit (Solarbio, Beijing, China). GFP-BMSCs were planted and cultured on the 24-well plate (each well contained a disk), at the density of 1.104 cells/well. These cells were cultured with complete culture medium containing superparamagnetic iron oxide (SPIO) (with the final iron concentration of 75 mg/mL; Sigma) in the 37°C, 5% CO2 (link) incubator for 24 h. For the co-culture of SPIO-GFP-BMSCs and monocytes, SPIO-GFP-BMSCs were first planted onto the lower layer of the Transwell cell culture plate (each well contained a disk; Corning, New York, NY, USA). Monocytes were seeded in the upper chamber. According to the pre-experiments, the co-culture ratios of SPIO-GFP-BMSCs and monocytes were set at 30:1 (co-culture group 1) and 1:30 (co-culture group 2), respectively (The selection of ratio is shown in Supplement 2). Cells were cultured with the phytohemagglutinin (PHA) (Sigma) which contained BMSC complete medium, i.e., DMEM/F12 medium (Gibco) containing 10% fetal bovine serum (FBS), 1% streptomycin, and 1% L-glutamine. The culture medium was replaced every 48 h.
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2

Endothelial Cell Invasion Assay

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Cell invasion assay was performed using a 24 wells Corning Transwell cell culture plate as previously described28 with slight modifications. Briefly, the outer surface of the insert was coated with 50 µL of fibronectin (10 μg/mL) for 1 hour at room temperature, and the excess liquid was gently aspirated. The inner surface was coated with 50 µL of Matrigel® (125 μg/mL) at room temperature for an hour. Human Umbilical Vein Endothelial Cell (HUVEC) were serum‐starved for 6 hours and seeded (4 × 104 cells) on the coated insert in the upper chamber with starvation media. The bottom chamber of each well contained 50 ng/mL of VEGF in starvation medium. Cells were incubated overnight at 37°C with 5% CO2, and nonmigrating cells were removed from the inner side of the insert using a Q‐Tip cotton swab. Paraformaldehyde (3.8%) fixed inserts were stained (0.1% Crystal violet in PBS, 2% ethanol) for 5 minutes at room temperature. Images were collected using a 20× bright field objective and analyzed using EMBL ImageJ.
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3

Differentiation of Primary Human Bronchial Epithelial Cells

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Differentiated primary human bronchial epithelial cells were derived from lungs removed at the time of lung transplantation at the Center for Organ Recovery and Education (Pittsburgh, PA, United States). Cells were prepared using previously described methods (Liu et al., 2013a (link), b (link)) approved by the University of Pittsburgh Institutional Review Board. Donor primary human CF and non-CF bronchial epithelial cells were first isolated from donor tissues and propagate under submerged cell culture. Upon confluence, epithelial cells were disassociated and seeded onto a transwell cell culture plate at approximately 2 × 105 cells/well (Corning, NY, United States). Epithelial cells were maintained in Bronchial Epithelial Cell Growth Medium (Lonza, Basel, Switzerland). The cell culture was changed to ALI by removing the apical medium 3 days after initial cell seeding and maintained for 3 weeks for cell differentiation.
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4

Co-culture of THP1 and SKGT Cells

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THP1 and SKGT EAC cell lines were obtained from the American Type Culture Collection. THP1 monocytes were cultured in RPM1 1640 containing 2 mM glutamine, 10 mM HEPES, 1 mM sodium pyruvate, 4.5 g l−1 of glucose, 10% fetal calf serum, and 0.05 mMβ-mercaptoethanol. SKGT cells were grown in RPMI 1640 supplemented with 2% fetal calf serum, penicillin, and gentamicin. Cells were cultured in 100 mm cell culture dishes or 6/24-well cell culture plates. 12 h before the beginning of each experiment, cells were cultured in serum-free medium with antibiotics. To polarise THP1 with SKGT cell, a co-culture was done with Transwell cell culture plate (Corning Life Sciences, Corning, NY, USA). The insert with 0.4 μm pores was seeded with SKGT cells at 3 × 106 as induced group and without any cells as control group. THP1 cells were plated in the bottom chamber at 2 × 106. After 3 days culture, the insert was discarded, and the polarised THP1 cell was examined by microscopy and then used for RNA isolation or migration and invasion tests.
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5

Cell Culture and Sorafenib Assay Protocols

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The human HCC cell lines LO2 and HuH-7 were purchased from Cell Bank of Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences (Shanghai, China) and cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum (FBS) in a humidified atmosphere of 95% air and 5% CO2 at 37° C. Sorafenib was obtained from MedChemExpress (New Jersey, USA). Cell Counting Kit-8 (CCK8) was purchased from Boster Biological Technology co.ltd (CA, USA). Transwell cell culture plate and matrigel matrix were from Corning (NY, USA).
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6

Lubricated Gene-Hydrogel Patch Characterization

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The lubricity properties of the lubricated gene-hydrogel patches were characterized by a high-temperature microdynamic wear tester (Optimal Instruments, USA). The prepared patches were placed on a sample table at a controlled temperature of 37°C, a friction frequency of 1 Hz, an amplitude of 4 mm, a load of 1 N and run for 1500 s, and the experimental data were recorded. Then, the patches were spread on the bottom of 24-well plates and inoculated with 208F cells, which were cocultured with the patches for 48 hours. The cytoskeletons and nuclei were stained using actin staining and DAPI staining, respectively, and the cell-spreading area was assessed. Then, 208F cells were inoculated in the lower chamber of a 24-well Transwell cell culture plate (Corning, USA), and the upper chamber was loaded with lubricated gene-hydrogel patches to coculture the cells and patches. The nuclei were stained with DAPI on days 1, 3, and 5 to detect siRNA release. Gene silencing efficiency was detected using qRT-PCR. The proliferation rate of each group of 208F cells was measured by CCK-8 assay according to the manufacturer’s protocol. The results were expressed using the proliferation rate by normalizing the mean absorbance value for each corresponding time point to the control.
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7

Neutrophil Migration Assay with Extracellular Vesicles

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PMNs (120 μl of 5 × 106/ml) were added to 480 μl aEV, lysed aEV, sEV, apoEV sample or HBSS at 37°C in a linear shaker (0.18 g) for 45 min. aEV, lysed aEV, and sEV samples were prepared from 1.92 × 107 cells, whereas apoEV samples were derived from 0.96 × 107 cells. The pretreated PMN samples were placed in the wells of a 3 μm pore Corning, NY, USA transwell cell culture plate coated with 10% FBS. Every well contained 2 × 105 cells. As a chemoattractant, 100 nM N-formylmethionyl-leucyl-phenylalanine was used. After 1 h incubation at 37°C, the transwell plate was centrifuged (Eppendorf 5810 R swing-bucket plate rotor, 3,220 g, 3 min, 4°C). Transmigrated cells were counted using an acid phosphatase assay37 (link) in a plate reader (Labsystems iEMS Reader MF; Thermo Scientific).
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8

Neutrophil Migration Assay with Extracellular Vesicles

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PMNs (120 μl of 5 × 106/ml) were added to 480 μl aEV, lysed aEV, sEV, apoEV sample or HBSS at 37°C in a linear shaker (0.18 g) for 45 min. aEV, lysed aEV, and sEV samples were prepared from 1.92 × 107 cells, whereas apoEV samples were derived from 0.96 × 107 cells. The pretreated PMN samples were placed in the wells of a 3 μm pore Corning, NY, USA transwell cell culture plate coated with 10% FBS. Every well contained 2 × 105 cells. As a chemoattractant, 100 nM N-formylmethionyl-leucyl-phenylalanine was used. After 1 h incubation at 37°C, the transwell plate was centrifuged (Eppendorf 5810 R swing-bucket plate rotor, 3,220 g, 3 min, 4°C). Transmigrated cells were counted using an acid phosphatase assay37 (link) in a plate reader (Labsystems iEMS Reader MF; Thermo Scientific).
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9

Monocyte-Platelet Interaction and Macrophage Differentiation

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Purified CD14+CD16- monocytes were cultured in RPMI 1640 medium supplemented with 10% charcoal stripped fetal bovine serum, 1% penicillin/streptomycin, and 1% l-glutamine. Platelets were activated with ADP (10 μg/ml) for 5 min at RT. CD14+CD16- monocytes were co-cultured with activated platelets at 1:100 ratio for 18 h at 37°C in polystyrene tubes. In some experiments, CD14+CD16- monocytes and activated platelets were placed in lower- and upper-chamber of Transwell cell culture plate (0.4 μm pore size) (Corning-Costar, Lowell, MA), respectively and cultured for 18 h at 37°C. To prepare human monocyte-derived macrophage (HMDM), purified monocytes were pretreated for 18 h with or without ADP-activated platelets and were differentiated into macrophages for 6 days in the presence of recombinant human M-CSF (50 ng/ml; PeproTech, Rocky Hill, NJ) without washing platelets.
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10

Transwell-Based Cell Invasion Assay

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A cell suspension of 1 × 106 cells in a serum-free medium was added in the upper chamber of Transwell cell culture plate (coated with Matrigel, packaged with 24-well inserts, and has a pore size of 8-μm; Corning Costar, Cambridge, USA). The lower chamber contained the medium with 5% FBS. After 24 h of culture, the Transwell chambers were removed and fixed with methanol for 30 min. After washing the traces of methanol with PBS, the chambers were stained with 1% (v/v) crystal violet at room temperature for 20 min. Chambers were washed three times with PBS and cells that did not invade through the Matrigel in the upper chamber were wiped off carefully using a cotton swab, and the number of cells that invaded to the lower chamber were observed and counted under a light microscope.
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