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Myc tag

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The Myc Tag is a small peptide tag that can be fused to the N- or C-terminus of a recombinant protein. It is commonly used for the detection and purification of the tagged protein. The Myc Tag consists of the amino acid sequence EQKLISEEDL and is recognized by commercially available anti-Myc antibodies.

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11 protocols using myc tag

1

Adipogenesis Regulation Molecular Markers

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Antibodies against CRMP2, phosphorylated CRMP2 (pCRMP2) Thr-514, CCAAT-enhancer-binding protein-α (C/EBPα), peroxisome proliferator-activated receptor gamma (PPARγ), adipocyte fatty acid binding protein-4 (FABP4), GSK-3β and phosphorylated GSK-3β (pGSK-3β) Ser-9 were purchased from Cell Signaling Technology (Danvers, MA, USA); glucose transporter 4 (GLUT4) from Novus Biologicals (Centennial, CO, USA); acetyl-CoA carboxylase 1 (ACC1), phosphorylated ACC1 (pACC1), diglyceride acyltransferase 2 (DGAT2), and GAPDH from GeneTex, Inc. (Irvine, CA, USA); fatty acid synthase (FAS) from BD Biosciences (San Jose, CA, USA); myc tag from Thermo Fisher Scientific (Waltham, MA, USA); and β-actin from Sigma (St. Louis, MO, USA). ECL reagent was purchased from Calbiochem (Merck Millipore, Billerica, MA, USA); Trizol Reagent from Life Technology (Carlsbad, CA, USA); 3-isobutyl-methylxanthine (IBMX), dexamethasone (Dex), and insulin from Sigma; non-specific scramble small interfering RNA (sramble siRNA, 5′-TTCTCCGAACGTGTCATGT-3′) and CRMP2-specific siRNA (Dypsl2-1: 5′-GGGAATGACATCCGCTGAT-3′; Dypsl2-2: 5′-CGGCTGAAGTCATCGCTCA-3′ and Dypsl2-3: 5′-GTTGAGAAGAGGCGGGTT-3′) purchased from BioTools, Inc. (Jupiter, FL, USA).; and DharmaFECT 1 reagent form Thermo Scientific DharmaFECT; Alexa Fluor 568 phalloidin and BODIPY® 493/503 from Thermo Fisher Scientific.
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2

Protein Expression Analysis in NSCLC Cells

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Total protein extracted from NSCLC cells (50 μg) was quantified using the Bradford method and then separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis. After being transferred to polyvinylidene fluoride membranes, the membranes were blocked with 5% skim milk for 2 h at room temperature (24-26 °C) and then incubated overnight (4 °C) with primary antibodies against one of the following: c-Myc (#5605, 1:500; Cell Signaling Technology), Cyclin D1 (#55506,1:500; Cell Signaling Technology), β-catenin (#8480, 1:500; Cell Signaling Technology), GAPDH (#5174, 1:500; Cell Signaling Technology), Myc tag (R951-25, 1:500, Thermo Fisher), laminB1 (sc-377000, 1:500, Santa Cruz), and α-tubulin (sc-8035, 1:500, Santa Cruz). On the second day, we incubated the membranes with a horseradish peroxidase-labelled secondary antibody (Santa Cruz) for 2 h at room temperature. Subsequently, a BioImaging System (UVP Inc., Upland, CA, USA) was used to analyse the protein bands densitometrically.
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3

Protein Extraction and Immunoblotting

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The whole cell protein extracts were homogenized using a lysis buffer followed by centrifugation at 14,000 × g for 15 minutes. Bradford’s method was used to quantify the protein concentrations. After immunoblotting, the nitrocellulose membranes were incubated with specific antibodies. Rabbit polyclonal antibody against ZSWIM5 (dilution, 1:400) was purchased from Thermo Fisher Scientific; Myc-tag, cyclin D1, cyclin E, cyclin A2, cyclin B1, MMP2, and MMP9 (dilution 1:500) were purchased from Cell Signaling Technology (Danvers, MA, USA). e-cadherin (dilution 1:500) was obtained from BD Biosciences (San Jose, CA, USA); ZO1 (dilution 1:500) was bought from Proteintech (Rosemont, IL, USA), and GAPDH (dilution 1:5,000) was purchased from Santa Cruz Biotechnology Inc. The nitrocellulose membranes were then incubated with peroxidase-conjugated secondary antibodies at room temperature for 2 hours, and blots were detected by a bio-imaging scanner system (DNR Bio-Imaging Systems, Israel).
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4

Western Blot Analysis of Cellular Stress Pathways

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Total cell lysates were made from mouse pancreatic tissue using RIPA buffer (1% Nonidet P40, 0.5% sodium doxycholate, 0.1% SDS, 1× PBS [pH 8.0]) with 1× Protease Inhibitor cocktails and 1× Phosphatase Inhibitor cocktail 2 and 3 (Millipore-Sigma). Lysate proteins from tissues or MEF cells were denatured by boiling the lysates in 2× SDS sample buffer for 5 min prior to electrophoresis on NuPAGE 8% Bis-Tris Midi gel (Invitrogen). The separated proteins were transferred to nitrocellulose membranes (0.45 μm, Thermo Scientific, Waltham, MA, USA) in carbonate transfer buffer using wet transfer conditions (Criterion Blotter, Bio-Rad). Primary antibodies (diluted in 5% BSA-TBST) used include: phospho-PERK (Thr980) (#3179, Cell Signaling, Danvers, MA, USA), PERK (#3192, Cell Signaling), phospho-eIF2α (Ser51) (#9721, Cell Signaling), eIF2α (#AHO1182, Invitrogen), Myc Tag (#R950-25, Invitrogen), and actin (#A5060, Millipore-Sigma). Appropriate IRDye-conjugated secondary antibodies were used, and IR fluorescence was detected using the LI-COR Odyssey CLx Imaging System and quantified using the LI-COR Image Studio Software (LI-COR Biosciences, Lincoln, NE, USA).
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5

Western Blot Protein Detection

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Immunoblotting was performed using standard methods and visualized by enhanced chemiluminescence as previously described (81 (link)). Antibodies were used at the following concentrations: CLVS1 (C82727 Lifespan Biosciences and PA5-32088 Invitrogen) 1:500, β-actin (6609 Proteintech) 1:3000, Myc-tag (PA1-981 Invitrogen) 1:800, DYKDDDDK (D6W5B Cell Signaling Technology) 1:800. Uncropped Western blots are shown in Supplemental Figure 10.
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6

Protein Signaling Pathway Analysis

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The following antibodies were used: EGFR (sc-03-G), Akt1 (sc-1618), C14ORF37 (UT2) (sc-139226), Rictor (sc-271081), Raptor (sc-81537) pAMPK (S485/491), AMPK (sc-25793), Alpha-Tubulin (sc-5546), were purchased from Santa Cruz Biotechnology. pEGFR (Y1173) from Invitrogen, Myc-tag (Cat#2278S), mTOR (Cat#2972), phospho p70S6K1 (T389) (Cat#9204), pPKC (T514) (Cat#9379), pAkt (S243) (Cat#4060), phospho MAPK (Cat#9101S), MAPK (Cat#4695), ULK1 (Cat#8054), pULK1-S757 (Cat#6888), and pULK1-(Cat#5869) were purchased from Cell Signaling. Actin (Cat#A2228) was from Sigma. PKC (Cat# ab71558) and phospho-mTOR(Cat#ab109268) were from Abcam. C225 (Cat #MABF120), was from EMD Millipore for EGFR immunoprecipitation studies. LC3 (Cat#NB100-2220) was from Novus biologicals. EGFR TKI AEE788 (Cat# S1486), Akt inhibitor, MK2206 (Cat#S1078), were obtained from Selleckchem. Plasmid-based transfections and siRNA-based transfections were performed using Lipofectamine 3000 (Invitrogen) and Lipofectamine RNAiMax (Invitrogen), respectively. Protein A/G beads (Santa Cruz Biotechnology) were used for immunoprecipitation.
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7

Molecular Cloning and Transfection

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DDIAS (1–998 amino acids) and HSP70 (1-641 amino acids) cDNA clones were obtained from the Korea Human Gene Bank, Medical Genomics Research center, KRIBB, Korea. DDIAS Full-length F (aa 1–998) and domain N (aa 1–400), M (aa 401–600) and C (aa 601–998) were amplified by PCR and cloned into the p3xFLAG-CMV vector (Sigma-Aldrich) to create the p3xFLAG-CMV-DDIAS. HSP70-wt (1-641 amino acids) clone was inserted into pcDNA3 vector with Myc tag (Invitrogen). The coding region of CHIP was obtained by PCR-amplification of HEK293T cDNA. HA-CHIP-wt (1-303 amino acids), HA-CHIP-ΔTPR (128–303 amino acids) and HA-CHIP-ΔUbox (1–195 amino acids) were amplified by PCR and inserted into the pcDNA3. Transfections were performed using TurboFect (Thermo Scientific, Rockford, lL, USA) according to the manufacturer's instructions.
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8

Overexpression and Knockdown of MDA-9/Syntenin

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The wild type (wt) MDA-9/Syntenin cDNA (Gene ID: 6386) was subcloned into SalI and NotI sites of the phosphorylated cytomegalovirus pCMV/myc/cyto plasmid, which has an N-terminal myc tag (Invitrogen) as described [4 (link)]. For knock down (KD) experiments, MDA-9/Syntenin-specific shRNA was constructed and cloned into the BamI-HindIII sites of pRNA3.1 vector (Genescript Corporation, Piscataway, NJ) as described earlier. Various MDA-9/Syntenin deletion constructs were also described previously [4 (link)].
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9

Recombinant Expression of Mouse MG53 and Orai1

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Using full-length mouse MG53 DNA (GenBank accession number: NM_001079932) as a template, GST-fused full-length MG53 or MG53 domains were constructed and were expressed in E. coli (DH5α), as previously described30 (link)44 (link). GFP-tagged full-length MG53 or PRY-SPRY was constructed using an eGFP vector, as previously described16 (link). HA-MG53 was constructed, as previously described23 (link). Orai1-myc was constructed by inserting Orai1 DNA (GenBank accession number: NM_175423.3) into the 5′ end of pcDNA3.1 A containing a myc-tag (Invitrogen, Waltham, MA, USA)23 (link).
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10

Western Blot Analysis of Protein Expression

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Cultured HUVECs were collected and lysed with lysis buffer containing 98% RIPA lysis buffer, 1% protease inhibitor, and 1% phosphatase inhibitor. The cells were incubated with the lysis buffer on ice for 30 min. The total protein concentration in the lysate was measured using the BCA protein assay kit from Beyotime Biotechnology, Shanghai, China. Equal amounts of protein from each sample were loaded onto SDS-PAGE gels and separated by electrophoresis. The proteins were then transferred onto polyvinylidene fluoride (PVDF) membranes and blocked with PBST containing 5% skim milk blocking buffer at room temperature for 2 h.
Primary antibodies, including O-GlcNAc (Cell Signaling Technology, #9875), GSDMD (Santa Cruz Biotechnology, sc-393581), GSDMD (Abcam, ab209845), β-actin (SAB, #21338), GAPDH (Proteintech), OGT (Santa Cruz Biotechnology, sc-74546), Myc Tag (Invitrogen, # R951-25), OGA (Proteintech, 14711-1-AP), were incubated with the membranes followed by incubation with HRP-conjugated secondary antibodies (anti-rabbit IgG from Bioword, and anti-mouse IgG from Bioword). Protein bands were detected using an Enhanced Chemiluminescent (ECL) reagent from Thermo Scientific, and the images were acquired with a ChemiDoc MP System from Bio-Rad. Densitometric analysis was performed using ImageJ Software to quantify the protein bands.
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