The largest database of trusted experimental protocols

9 protocols using tubb3

1

Immunostaining for Neuronal and ER Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the immunostaining performed for stretching and toxicity analysis, samples were fixed in 2% PFA, permeabilized with 0.5% Triton X-100, and blocked with 5% FBS at room temperature. Primary antibody TUBB3 (#T8578, 1:500, Sigma, Darmstadt, Germany) was diluted in 3% FBS/0.2% Triton X-100 in DPBS and incubated overnight at 4 °C. Samples were then washed and incubated with secondary antibody (R6393, 1:500, Invitrogen, Carlsbad, CA, USA) and Hoechst 33342 (H3570, 1:1000, Invitrogen, Carlsbad, CA, USA). All images were acquired using a fluorescent microscope (TE2000-U, Nikon, Minato, Tokyo, Japan).
For the immunostaining performed on 2-well silicone insert, cells were fixed in 2% PFA and 7.5% sucrose, permeabilize in 0.1% Triton X-100 and blocked with 5% goat serum (GS) at room temperature. Primary antibodies TUBB3 (#T8578, 1:500, Sigma, Darmstadt, Germany) and KDEL (PA1-013, 1:200, Thermo Scientific, Waltham, MA, USA) were incubated overnight at 4 °C. Samples were then washed and incubated with secondary antibody (#A21449 and #06380, 1:500, Thermo Scientific, Waltham, MA, USA) Hoechst 33342 (H3570, 1:1000, Invitrogen, Carlsbad, CA, USA). All images were acquired using a laser scanning confocal microscope (Eclipse Ti, Nikon, Minato, Tokyo, Japan).
+ Open protocol
+ Expand
2

Immunofluorescence Analysis of C9ORF135 in hESCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
N-terminal C9ORF135 peptides were used to immunize two rabbits over the course of one month. The immunized sera were collected and purified with an affinity column (Epitomics Inc., Burlingame, CA, USA). The purified antibody was used for immunofluorescence analysis alongside antibodies against TUBB3 and MAP2 (Chemicon, Temecula, CA, USA), E-cadherin (BD Biosciences, San Jose, CA, USA), and anti-FLAG (Sigma). The antibodies to Nestin, Sox17, and KDR were purchased from Abcam (Cambridge, UK), and anti-OCT4 was obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Alexa Fluor-labeled secondary antibodies were obtained from Invitrogen.
The digested H1 hESCs were washed twice with PBS plus 0.5% FBS. Then, the cells were stained with primary antibody against C9ORF135 (1:200) and the corresponding secondary antibody (goat anti-rabbit IgG). Approximately 10,000 cells were acquired with a BD FACSCalibur machine (BD Biosciences). Data were analyzed with FACSCalibur tools.
+ Open protocol
+ Expand
3

Establishing GBM Tumor Spheres from Specimens

Check if the same lab product or an alternative is used in the 5 most similar protocols
TS formation was established from human GBM specimens as described previously [39 (link)]. GBM TSs used in the study were positive for markers of stemness, cluster of differentiation (CD) 133, and nestin (Abcam, Cambridge, UK) in immunocytochemistry. GBM TSs displayed evidence of neuroglial differentiation with expression of glial fibrillary acidic protein (GFAP) (Dako, Carpinteria, CA, USA), myelin basic protein (MBP), neuronal nuclei (NeuN), and tubulin beta 3 (TUBB3) (Chemicon, Temecula, CA, USA). GFAP and MBP could not be detected in the U87 cell line.
+ Open protocol
+ Expand
4

Characterization of GBM Tumor Spheres

Check if the same lab product or an alternative is used in the 5 most similar protocols
TS formation from human GBM specimens followed previous methods (Kong et al. 2013b (link)), and their expression of stemness markers, CD133, nestin, musashi, and podoplanin (Abcam, Cambridge, UK), was tested by immunocytochemistry. Neuroglial differentiation in GBM TSs was evaluated by monitoring the expression of GFAP (Dako, Carpinteria, CA, USA), MBP, NeuN, and TUBB3 (Chemicon, Temecula, CA, USA).
+ Open protocol
+ Expand
5

Immunohistochemical Localization of CB1 Receptor

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry (IHC) and immunofluorescence (IF) of the selected tissue was performed using a polyclonal antibody against CB1R (Abcam Cat# ab23703, RRID: AB_447623, dilution 1:200 IHC, 1:20 IF), the immunogen corresponding to C terminal amino acids 461 ± 472 of human cannabinoid receptor. For double immunofluorescent labeling, the following monoclonal antibodies were additionally used: anti-glial fibrillary acidic protein (GFAP, Sigma-Aldrich Cat# G-A-5, RRID: AB_2314539, dilution 1:500), anti-beta-tubulin III (TUBB3, Sigma-Aldrich Cat# T8660, RRID: AB_477590, dilution 1:200), anti-neuronal nuclei (NeuN, Millipore Cat# MAB377, RRID: AB_2298772; dilution 1:800), anti-synaptophysin (SYP, Dako Cat# M0776, RRID: AB_2199013; dilution 1:250).
+ Open protocol
+ Expand
6

Characterization of Neural Crest Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
NCCs were plated onto matrigel‐coated coverslips and cultured in N2 medium supplemented with 10 ng/ml bFGF and 20 ng/ml EGF. The cells were incubated for 48 hr for characterisation studies and 5 days for spontaneous differentiation analysis. Immunocytochemistry was performed as previously described (Kingham, Kolar, Novikova, Novikov, & Wiberg, 2014). The following primary antibodies were used: transcription factor AP‐2 alpha (TFAP2A; DHSB, mouse monoclonal, 1:100), glial fibrillary acidic protein (Dako, rabbit polyclonal, 1:400), β‐1,3‐glucuronyltransferase 1 (B3GAT1; Sigma‐Aldrich, mouse monoclonal, 1:100), microtubule‐associated protein 2 (Chemicon, rabbit polyclonal, 1:100), TUBB3 (Sigma‐Aldrich, rabbit polyclonal, 1:500), NEFH (Abcam, mouse monoclonal, 1:500), NGFR (Advanced Targeting Systems, mouse monoclonal, 1:100), S100 calcium‐binding protein B (S100B; Dako, rabbit polyclonal, 1:2000), and SRY‐box 10 (SOX10; R&D Systems, mouse monoclonal, 1:100). The specificity of NGFR antibody was validated by immunocytochemical staining of both hESCs‐ and MACS‐enriched cells. NGFR positive cells were only observed in the enriched population, thus confirming the specificity of the NGFR antibody for NCCs as has been previously documented (Lee et al., 2007). No NGFR positive cells were observed in the hESCs cultures.
+ Open protocol
+ Expand
7

Western Blot Analysis of Protein Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins (30–40 μg) were separated using SDS-PAGE, transferred to nitrocellulose membranes, and stained with Ponceau Red. According to the MW markers and Ponceau patterns, membranes were cropped to detect different proteins and were separately blocked with blocking buffer (PBS/0.05% Tween/5% non-fat milk). Membranes were incubated at 4 °C overnight with primary antibodies, followed by incubation for 1 h with a secondary HRP-conjugated anti-IgG antibody (Jackson). The primary antibodies were Flag (Cell Signaling D6W5B), Snail (Abcam 135708), Twist (Abcam 49254), E-cadherin (Abcam 76055), β-actin (Santa Cruz Biotechnology 47778), MMP9 (Santa Cruz Biotechnology 4778), Nestin (Abcam 22035), CD44 (Cell Signaling 3570S), GFAP (Cell Signaling 3670S), TUBB3 (Sigma Aldrich 4700544), and Sox2 (Cell Signaling 3579S). Bands were revealed using the West Dura chemiluminescence system (Thermo-Fisher), and imaging was performed on a Syngene G:Box instrument (Synoptics, Cambridge, UK).
+ Open protocol
+ Expand
8

Autophagy Signaling Pathway Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
TUBB3 (Clone TU-20; Sigma, SAB4700544), GFAP (Sigma, SAB4501162), TFE3 (Sigma, HPA023881), ATG7 (Cell Signaling Technology, 2631), TFEB (Cell Signaling Technology, 4240), FOXO1 (Cell Signaling Technology, 2880), FOXO3 (Cell Signaling Technology, 2497) ULK1 (Cell Signaling Technology, 4773), BECN1 (BD Biosciences, 612113), SQSTM1/p62 (BD Biosciences, 610832), LC3 (Novus Biologics, NB100-2220), LAMP1 and LAMP2 (Developmental Studies Hybridoma Bank, University of Iowa, H4A3 and H4B4, respectively), CTSD D-2-3,98 (link) CTSB (Cortex Biochemicals, CR6009RP) and TFEB (Bethyl Laboratories, A303-672 and -673).
+ Open protocol
+ Expand
9

Immunohistochemical Characterization of Nerve Conduit Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Histological and immunohistochemical staining was performed on conduit cryosections (16 μm) as previously described (Jones et al., 2015). The following primary antibodies were used: human nuclear antigen (HNA; Millipore, mouse monoclonal, 1:100), TUBB3 (Sigma‐Aldrich, rabbit polyclonal, 1:500), and S100B (Dako, rabbit polyclonal, 1:2000). The specificity of the HNA antibody was validated by immunohistochemical staining of conduit cryosections harvested from all PNI treatment groups. HNA positive cells were only observed in the hESC and NCC transplanted animals, thus confirming the specificity of the HNA antibody to cells of human origin. No HNA positive cells were observed in the rat Schwann cell treatment group (Figure S1).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!