The largest database of trusted experimental protocols

Sodium dodecyl sulfate (sds)

Manufactured by Serva Electrophoresis
Sourced in Germany

SDS (Sodium Dodecyl Sulfate) is a chemical agent used in electrophoresis techniques. Its primary function is to denature proteins, disrupting their native structure and allowing for separation based on their molecular weight. SDS binds to proteins, providing them with a uniform negative charge, enabling their migration through a gel matrix during electrophoresis.

Automatically generated - may contain errors

21 protocols using sodium dodecyl sulfate (sds)

1

Quantification of Thiol Groups in Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Thiol groups were measured according to the modified Ellman method. Briefly, 1.0 ml of 40 mM Ellman’s reagent (5,5’-dithiobis-(2-nitrobenzoic acid) (DTNB) solution (Serva, Heidelberg, Germany) was added to the sample (86 mM Tris (Sigma Aldrich, Saint Louis, MO, USA), 90 mM glycine (Avantor, Gliwice, Poland), 4 mM ethylenediaminetetraacetic acid (EDTA) (Avantor, Gliwice, Poland), 8 M urea (Sigma Aldrich, Saint Louis, MO, USA), 0.5% sodium dodecyl sulfate (SDS, Serva, Heidelberg, Germany), 0.2 M Tris-HCl (Sigma Aldrich, Saint Louis, MO, USA)) with pH 8.0. Next, 200 μl of each sample was added to 1.0 ml of DTNB. The samples were incubated at room temperature for 30 min. Cysteine was used (Avantor, Gliwice, Poland) as a standard, and absorbance was measured by a Perkin Elmer spectrophotometer Lambda 25 at a wavelength of λ= 412 nm (Biocompare, Baltimore, MD, USA). The concentration of -SH groups was measured from a calibration curve based on cysteine solution in PBS. The concentration of -SH groups was expressed in micromoles per milligram of whole protein in the ileal supernatant.
+ Open protocol
+ Expand
2

Optimized Chemicals Sourcing for Biochemistry

Check if the same lab product or an alternative is used in the 5 most similar protocols
F1,6BP and Antifoam (polypropylene glycol P 2000) were from Sigma-Aldrich Chemie GmbH (Munich, Germany), IPTG was from PEQLAB Biotechnologie GmbH (Erlangen, Germany), Bradford solution was from Biorad and sodium dodecyl sulfate from SERVA Electrophoresis GmbH (Heidelberg, Germany). All other chemical were either from Carl Roth GmbH (Karlsruhe, Germany), Fluka (Taufkirchen, Germany), or Merck KGaA (Darmstadt, Germany) and were of the highest available purity. The crude glycerol was delivered from a biodiesel producer (ADM Hamburg, Germany) and contained 83.20% glycerol, 10.4% water, 6.4% NaCl, with less than 0.01% methanol, and no detectable traces of other organic compounds (according to supplier’s data sheet). All restriction enzymes used were from New England Biolabs (Frankfurt, Germany). The Pwo DNA Polymerase for gene amplification was from Roche Applied Science (Mannheim, Germany), Taq DNA polymerase used for screening-PCR was from Genaxxon Bioscience GmbH (Ulm, Germany).
+ Open protocol
+ Expand
3

Polymeric Biomaterial Synthesis and Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Polymethylmethacrylate (PMMA) polymer (molecular weight: 400 000 to 550 000 kDa) was purchased from Alfa Aesar (Kandel, Germany). Benzoyl peroxide (BPO), benzalkonium chloride (BKC), acetone, and dimethylsulfoxide (DMSO) were purchased from Loba Chemie (Mumbai, India). Sodium dodecylsulfate and Triton X-100 (TX-100) were acquired from Serva (Heidelberg, Germany). Tween 80 was supplied by Adwic Company (Cairo, Egypt). Dichloromethane (DCM) was acquired from Carlo-Erba (Milan, Italy). Distilled water (DW) was used in all experiments. RPMI 1640 was obtained from Corning (NYC, USA), and Fetal Bovine Serum was obtained from High-Sense (PA, USA). Penicillin–streptomycin (10×), l-glutamine, and trypsin (0.025%) were obtained from Lonza (Basel, Switzerland). Phosphate buffered saline (PBS, pH 7.4) was obtained from Genetix Biotech (New Delhi, India) and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) was obtained from SERVA (Heidelberg, Germany). Nutrient broth was obtained from NEOGEN (Lansing, MI, USA). Agar–Agar was obtained from B&V (Parma, Italy).
+ Open protocol
+ Expand
4

Quantifying Sulfhydryl Groups in Spleen

Check if the same lab product or an alternative is used in the 5 most similar protocols
The sulfhydryl groups were determined using the Ellman modified method described by Chan and Wasserman (1993 ). Briefly, 1 ml of 40 mM DTNB solution (5,5′dithiobis(2-nitrobenzoic acid); Sigma Aldrich, USA) was added to the sample (86 mM Tris (Serva, Germany), 90 mM glycine (Serva, Germany), 4 mM EDTA (Sigma Aldrich, USA), 8 M urea (Avantor, Poland), 0.5% SDS (sodium dodecyl sulfate, Serva, Germany), 0.2 M Tris HCl (Trizma base, Sigma Aldrich, USA)), pH 8. Next, 200 μl of the samples were added to 1 ml of DTNB solution. Samples were incubated at room temperature for 30 min. Cysteine was used (Sigma Aldrich, USA) as a standard and the absorbance was measured by a spectrophotometer (Perkin Elmer, Lambda 25, Biocompare, USA) at a wavelength of λ = 412 nm. The concentration of –SH groups was measured from a calibration curve based on a Cysteine solution in PBS. The concentration of the thiol groups was presented as micromolar per milligram of whole protein in the supernatant of spleen.
+ Open protocol
+ Expand
5

Proteome Analysis of 6-MP and 6-TG

Check if the same lab product or an alternative is used in the 5 most similar protocols
All cell culture reagents, RPMI, fetal calf serum (FCS), phosphate buffered saline (PBS), penicillin, and streptomycin, were purchased from PAA Laboratories, Colbe, Germany. Acetonitrile (ACN) was purchased from Promochem, Wesel, Germany. CHAPS was obtained from Applichem, Darmstadt, Germany. Urea, thioUrea, dithiothreitol (DTT), trypsin, trifluoroacetic acid (TFA), sodium carbonate, ammonium bicarbonate, 6-MP, 6-TG, and DMSO were obtained from Sigma-Aldrich, Steinheim, Germany. Ampholytes, protein assay kits, and immobilized pH gradient strips (IPG strips) were obtained from Bio-Rad, Munich, Germany. Protease and phosphatase inhibitor cocktails were purchased from Roche, Mannheim, Germany. Glycerin, potassium ferricyanide, and sodium thiosulfate were purchased from Merck, Darmstadt, Germany. Formic acid was from BASF, Ludwigshafen, Germany. Bromophenol blue and Trizma base were from Carl Roth, Karlsruhe, Germany. Sodium dodecyl sulfate (SDS) was purchased from Serva, Heidelberg, Germany.
+ Open protocol
+ Expand
6

Proteomic Analysis of Serpinogenic Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
NanoPro 1000 reagents were obtained from ProteinSimple (Santa Clara, USA). Dry milk and urea was obtained from Roth (Karlsruhe). 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate (CHAPS) was from Merck (Darmstadt). DL-Dithiothreitol (DTT), iodoacetamide (IAA) and thiourea was obtained from Sigma (Steinheim, Germany). IPG buffer was from Amersham Biosciences (Freiburg). Sodium dodecyl sulfate was bought from Serva (Heidelberg). Tris pure was obtained from Applichem (Darmstadt). Polyvinylidene fluoride membranes were purchased from Millipore Corporation (Bedford). IPG strips were from GE Healthcare (Munich). The monoclonal mouse anti-human serpinA1 antibody was bought from R&D Systems (MAB1268) (Minneapolis).
+ Open protocol
+ Expand
7

Synthesis and Functionalization of Polystyrene Particles

Check if the same lab product or an alternative is used in the 5 most similar protocols
Polystyrene particles were purchased at Microparticles GmbH (Berlin) or synthesized using emulsifier free emulsion polymerization.
N-Trimethoxysilylpropyl-N,N,N-trimethylammonium chloride (ABCR GmbH, Karlsruhe, Germany, 50% in methanol), 3-mercapto-1-propanol (ABCR GmbH, Karlsruhe, Germany, >96%), sodium dodecyl sulfate (Serva Electrophoresis GmbH, Heidelberg, Germany), Hellmanex III (Hellma GmbH, Müllheim, Germany), ethanol (Sigma-Aldrich GmbH, Munich, Germany, ≥99.8%), n-hexane (VWR International GmbH, Darmstadt, Germany, >98%), NaCl (Sigma-Aldrich GmbH, Munich, Germany, ≥99.0%), NaOH (Sigma-Aldrich GmbH, Munich, Germany, ≥98%), ammonium hydroxide solu-tion (Sigma-Aldrich GmbH, Munich, Germany, 28.0-30.0%), HCl (Grüssing GmbH, Filsum, Germany, 1 M) were used as received. Standard microscopy slides (Menzel, Braunschweig, Germany) were used.
+ Open protocol
+ Expand
8

Proteomic Analysis of Cellular Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Reagents and their sources were as follows: phosphate buffer saline (PBS) (PAA Laboratories, Cölbe, Germany), sodium carbonate, ammonium bicarbonate, thiourea, dithiothreitol (DTT), urea, trypsin, trifluoroacetic acid‎ (TFA) (Sigma-Aldrich), CHAPS (AppliChem, Darmstadt, Germany), Acetonitril (ACN) (Promochem, Wesel, Germany), Immobilized pH gradient strips (IPG strips), ampholytes, protein assay kit (Bio-Rad, Munich, Germany), protease and phosphatase inhibitor cocktails (Roche, Mannheim, Germany), sodium dodecyl sulfate (SDS) (Serva, Heidelberg, Germany), potassium ferricynaide, Glycerin, sodium thiosulfate (Merck, Darmstadt, Germany), formic acid (BASF, Ludwigshafen, Germany), bromophenol blue (Carl Roth, Karlsruhe, Germany).
+ Open protocol
+ Expand
9

Enzymatic Assay for Glucose Oxidase

Check if the same lab product or an alternative is used in the 5 most similar protocols
GOx from Aspergillus niger was purchased from Sigma-Aldrich (St. Louis, MO, USA). Peroxidase from horseradish (HRP) and 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) were purchased from AppliChem (Darmstadt, Germany). Sodium metaperiodate (NaIO4) was purchased from VWR Chemicals (Leuven, Belgium). Zinc acetate dihydrate (Zn(O2CCH3)2·2H2O) and D-glucose monohydrate were purchased from Lachner (Neratovice, Czech Republic), while HmIM was purchased from Sigma-Aldrich (St. Louis, MO, USA). Sodium dodecyl sulfate (SDS) was purchased from Serva (Heilderberg, Germany). All reagents were of analytical grade and were used as purchased. All solutions were prepared with distilled water.
+ Open protocol
+ Expand
10

Cell Culture and Molecular Reagent Acquisition

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell culture media Dulbecco's Modified Eagle's medium (DMEM), fetal calf serum (FCS), phosphate buffer saline (PBS), penicillin and streptomycin were purchased from PAA Laboratories, Pasching, Austria. Fluorescein isothiocyanate-conjugated dextran (FITC-dextran), 4 kDa (FD4), Trypsin, MPA, and DMSO were purchased from Sigma-Aldrich, Steiheim, Germany. Protease and phosphatase inhibitor cocktails were purchased from Roche, Mannheim, Germany. Bromophenol blue was obtained from Carl Roth, Karlsruhe, Germany. Sodium dodecyl sulfate (SDS) was obtained from Serva, Heidelberg, Germany. Glycerin, potassium ferricynaide, and sodium thiosulfate were purchased from Merck, Darmstadt, Germany. Formic acid was purchased from BASF, Ludwigshafen, Germany. Magnesium chloride (MgCl2), M-MLV RT enzyme, and 5X PCR buffer were from Invitrogen, Karlsruhe, Germany. Deoxynucleotide triphosphates (dNTPs) were from Roche, Mannheim, Germany and PCR primers were synthesized by Eurofins, Ebersberg, Germany. Ribonuclease (RNAase) inhibitor was obtained from Promega, Mannheim, Germany. The cell lysis buffer (10X) was obtained from Cell Signaling Technology, Danvers, MA, USA. All other chemicals used in this work were from the highest available purity from commercial sources unless otherwise stated.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!