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Ultracut uct

The Ultracut UCT is an ultramicrotome designed for the preparation of ultra-thin sections for transmission electron microscopy (TEM) applications. It features a high-performance, servo-controlled cutting system that ensures precise and consistent sample sectioning. The Ultracut UCT allows for the production of sections with thicknesses ranging from 50 to 1,500 nanometers, catering to the diverse needs of TEM sample preparation.

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5 protocols using ultracut uct

1

Characterization of Lignin Nanoparticle Photonics

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A JSM-7401F field emission scanning electron microscope was used to image LNPs and LNPs photonic crystal samples. An accelerating voltage of 1–2 kV and a working distance of 2–15 mm were used during measurement. Some samples were coated for 60–120 s with gold using a JFC-1200 fine coater before the SEM study. The gold particles added by sputtering are about 5–15 nm in size and they were added to increase the contrast in the images. Annular dark field (ADF) scanning transmission electron microscopy (STEM) images were obtained using a ThermoFisher Themis Z double aberration-corrected TEM operated at 300 kV with a convergence angle of 21 mrad and a dwell time of 3 µs. The material was sectioned to 200 nm thickness using ultramicrotomy using a Leica Ultracut UCT with a 45° diamond knife (Diatome) after the crystalline lignin nanoparticles first had been embedded in Agar low viscosity resin to facilitate sectioning.
A Nikon FN-S2N (Japan) microscope was used to image the rectangular platelets of LNPs and record a movie of the assembly and rearrangement of LNPs during evaporation. A Dino-Lite Edge 3.0 digital microscope was used to image the photonic crystals of LNPs.
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2

Transmission Electron Microscopy Sample Preparation

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Similar to scanning electron microscopy, samples were dehydrated with ethanol solutions of 50%, 70%, 90%, and three times 100%, over 30 ​min prior to be washed with propylene oxide three times each for duration of 5 ​min. They were then mixed in 1:1 propylene oxide: Epon 812 resin overnight as propylene oxide evaporates. Samples were changed to fresh resin, embedded in flat bed molds and polymerized for 48 ​h at 60 ​°C. 60–70 ​nm ultrathin sections were produced using Leica Ultracut UCT and a Diatome diamond knife at an angle of 6 ​°C. Sample sections were picked up on 100 mesh formvar coated copper grids then contrast stained with 2% methanolic uranyl acetate for 5 ​min and Reynolds lead citrate for another 5 ​min. Samples were viewed on JEOL 1200 TEM at an accelerating voltage of 80 ​kV. TIF images were captured using Olympus iTEM soft imaging system.
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3

STEM Imaging of Pepto-Bismol Bismuth Subsalicylate

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In order to facilitate STEM imaging of crystalline BSS, a small amount (∼20 μg) of the washed and dried powder from the Pepto-Bismol original liquid formulation (BSS-PB) was embedded in a resin (LR White) in a gelatin capsule (size 00) and then hardened at 60 °C for 24 h. Ultra-thin sectioning, with an estimated section thickness of 40 nm, was later carried out using a Leica Ultracut UCT with a 45° diamond knife from Diatome. The sections were then transferred to carbon-coated copper grids (EMS-CF150-Cu-UL).
STEM images of BSS-PB were obtained using a Thermo Fisher Themis Z double aberration-corrected TEM. The microscope was operated at an accelerating voltage of 300 kV. The images were acquired using a beam current of 10 pA, a convergence angle of 16 mrad and a dwell time of 8 µs. iDPC and ADF images were obtained simultaneously. The ADF detector was set at a collection angle of 25–153 mrad. The iDPC images were formed using a segmented ADF detector. A high-pass filter was applied to the iDPC images to reduce low-frequency contrast. The lattice averaged potential maps were obtained by crystallographic image processing using the software CRISP50 (link).
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4

Ultrastructural Analysis of WT and SOCS3-null Cells

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WT and SOCS3-null AS-M.5 cells were seeded at a density of 1 × 106 cells per ml into 6-well plates and onto Thermanox coverslips (13 mm diameter) for culturing to confluency. The cells were then fixed in 1.5% (w/v) glutaraldehyde in 0.1 M sodium cacodylate buffer at 4 °C for 1 h. Following three washes in 0.1 M sodium cacodylate buffer in 2% (w/v) sucrose, the cells were incubated with 1% (w/v) osmium tetroxide/0.1 M sodium cacodylate for 1 h, washed three times in distilled water, and incubated in 0.5% (w/v) uranyl acetate in the dark for 1 h. Following two rinses in distilled water, cells were dehydrated in stepwise alcohol increments (30–100% (v/v)) and incubated overnight in a 1:1 mix of propylene oxide/TAAB araldite Epon 812 resin. The propylene oxide was then allowed to evaporate to leave pure resin, which was changed twice before the sample was embedded in fresh resin which was allowed to polymerise at 60 °C for 48 h. Ultrathin sections were cut using a Leica Ultracut UCT and a Diatome diamond knife, contrast stained with aqueous 2% (w/v) methanolic uranyl acetate and Reynolds lead citrate, and viewed using a LEO 912AB TEM (Carl Zeiss) at an accelerating voltage of 120 kV. TIF images were captured using an Olympus Soft Imaging System and image contrast modified using Adobe Photoshop CS.
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5

Transmission Electron Microscopy of Extracellular Vesicles

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Cells collected 4 h after TACE for transmission electron microscopy (TEM) analysis were detached with scraper, washed in PBS, and then fixed in 4% paraformaldehyde solution for 48 h. Samples were treated with 1% osmium tetroxide (OsO4) for 1 h at 4 °C before being dehydrated in increasing grades of alcohol (10 min each: 50%, 70%, 90%; 2 × 5 min: 100%) and embedded in an epoxy resin. Ultrathin sections (70–100 nm) were cut with a Leica Ultracut UCT equipped with a diamond knife (Diatome), transferred to copper grids, stained with 2% aqueous uranyl acetate, and examined with a H-7650 electron microscope at 80 KV. The purified EVs were left on formvar/carbon copper grids, and droplets of EVs were cleared with filter papers. The grids were negatively stained with 2% uranyl acetate for 3 min. After washing with PBS, images were obtained by TEM at 80 KV (H-7650; Hitachi). For EV morphology analysis, 10 μl of EV aliquot sample was applied to a glow-discharged 300-mesh R2.0/2.0 Quantifoil grid. The specimen grid was blotted by Whatman #1 filtration paper and then immediately plunged into liquid ethane to rapidly form a thin layer of amorphous ice by using a Thermo Scientific Vitrobot Mark IV system. The grid was transferred under liquid nitrogen to a Thermo Scientific Glacios Cryo-TEM. Images were recorded by a Thermo Scientific Falcon direct electron detector.
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