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13 protocols using phorbol 12 myristate 13 acetate

1

Platelet Activation Reagents and Standards

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Adenosine 5’-diphosphate (ADP), thrombin-6 receptor activating peptide (TRAP-6), and collagen were purchased from Sigma-Aldrich (St. Louis, Missouri/MO, U.S.A). Phorbol 12-myristate 13-acetate (PMA) was obtained from Tocris-Cookson. Antimycin A was obtained from Genetica y Tecnologia spa (GENYTEC, Chile). Standards for caffeic acid, myricetin, rutin, quercetin, kaempferol, kuromanin chloride (cyanidin 3-O-glucoside), and myrtillin (delphinidin 3-O-glucoside) were from Cayman Chemical (Ann Arbor, MI). All used solvents were of HPLC quality and purchased from Burdick and Jackson (Muskegon, MI, USA).
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2

Differentiation of U937 Cells into Macrophages

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Human promonocytic leukemia U937 cells (ATCC® CRL-1593.2™, Manassas, Virginia, USA) were cultured in RPMI-1640 medium, supplemented with 10% fetal bovine serum (FBS; Gibco, 10270, Carlsbad, California, USA), and 293T cells from the Type Culture Collection of the Chinese Academy of Sciences (Shanghai, China) were cultured in Dulbecco's Modified Eagle Medium (DMEM), supplemented with 10% FBS at 37°C in a 5% CO2 incubator. The methods for the differentiation of U937 cells into macrophages as previously described [12 (link)]. Briefly, U937 cells were cultured in RPMI-1640 medium without FBS for 5 hours and then incubated in RPMI-1640 medium, supplemented with 10% FBS, and 100 ng/mL phorbol 12-myristate 13-acetate; (Tocris Biotechne, 1201, Shanghai, China), for 48 hours. When approximately 70% of the cells became adherent and appeared macrophage phenotype, phosphate-buffered saline was used to wash the non-adherent cells twice. The U937-derived macrophages were used to perform further assays.
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3

Neurochemical Signaling Pathway Reagents

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Fluo-5F and Fluo-4 pentapotassium salt and Alexa Fluor 594 hydrazide Na salt were from Molecular Probes. UBO-QIC (Gαq-inhibiting compound) was from the Institute of Pharmaceutical Biology, University of Bonn, Germany. 2,3-dihydroxy-6-nitro-7-sulfamoylbenzo[f]quinoxaline-2,3-dione (NBQX), gabazine (SR95531), (-)-Quinpirole hydrochloride, (S)-(-)-sulpiride, phorbol 12-myristate 13-acetate (PMA), U0126, cyclopiazonic acid (CPA), thapsigargin, heparin sodium salt, ryanodine, U73122, 8-Br-cyclic ADP ribose, tetrodotoxin-citrate, pertussis toxin, and nifedipine were from Tocris. All others were from Sigma. All drugs were introduced to the artificial cerebrospinal fluid unless otherwise noted.
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4

Astrocyte Differentiation Media Compositions

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Astro-1 medium was composed of DMEM/F12 medium supplemented with N2 (Gibco, 17502048), B27 without vitamin A (Gibco, 12587010), 100 nM LDN-193189 dihydrochloride (Tocris, 6053), and the human recombinant proteins PDGF-AA (R&D Systems, 221-AA), JAGGED-1 (R&D Systems, 1277-JG), DLL-1 (R&D Systems, 1818-DL), ONCOSTATIN M (R&D Systems, 295-OM), LIF (R&D Systems, 7734-LF), and CNTF (R&D Systems, 257-NT) (all at 10 ng/mL concentration).
Astro-2 medium was composed of DMEM/F12 base medium supplemented with N2 (Gibco), B27 complete (Gibco, 17504044), 1% lipid supplement (Gibco, 11905031), and the recombinant proteins JAGGED1, DLL-1, ONCOSTATIN M, LIF, and CNTF (all at 10 ng/mL concentration) (R&D Systems).
Astro-3 medium was composed of DMEM/F12 base medium supplemented with N2, B27 with vitamin A, 1% lipid supplement (Gibco), and JAGGED1, DLL-1, LIF, CNTF (all at 10 ng/mL concentration), hNRG1/EGF domain (20 ng/mL, R&D Systems, 396-HB), 2 μM forskolin (Tocris, 1099), 200 nM phorbol-12 myristate-13 acetate (Tocris, 1201), 40 ng/mL triiodothyronine T3 (Tocris, 6666), and 200 μM ascorbic acid (Tocris, 4055).
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5

Cellular Stress Response Assay

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As2O3 (A1010, 330 mM stock solution resuspended in 1 N NaOH) and MG132 (C2211, Z-Leu-Leu-Leu-al, 50 mM stock solution resuspended in DMSO) were from Sigma (Lyon, France). Phorbol-12-myristate-13-acetate (PMA) was acquired from Tocris (Bristol, UK), and Coelenterazine H from Nanolight Technology (Pinetop, AZ, USA).
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6

Modulating HGPS iPSC-derived MSCs

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MSCs derived from HGPS iPSCs (HGPS MSCs) and WT iPSCs (WT MSCs) were cultured in KnockOut Dulbecco’s modified Eagle’s medium (Invitrogen, Carlsbad, CA), supplemented with 20% fetal bovine serum (research grade, Sigma), 1% non-essential amino acids (Invitrogen), 1% glutamax (Invitrogen), and 0.1% β-mercaptoethanol (Invitrogen). Cell cultures were maintained at 37 °C, in 5% CO2 in a humidified atmosphere, with the media changed every 2 days. Six hours after seeding, MSCs were treated with 0.1% dimethyl sulfoxide, 3 μM FTI (tipifarnib, R115777; Selleck Chemicals, Houston, TX), 1 μM methoctramine tetrahydrochloride (M105, Sigma), 10 μM all-trans retinoic acid (R2625, Sigma), 0.1 μM phorbol 12-myristate 13-acetate (1201, Tocris), 25 μM LY-294.002 hydrochloride (sc-215273A, Santa Cruz), 12.5 μM 8-Bromo-cAMP sodium (B7880, Sigma), 10 μM 13-cis-retinoic acid (5513, Tocris), 10 μM methotrexate (A6770, Sigma), 10 μM azathioprine (A4638, Sigma), 50 μM SB 242.084 dihydrochloride hydrate (2901, Tocris), 50 μM SMER28 (4297, Tocris). Cells were analyzed after 72 hours of treatment.
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7

Proteasome and Calpain Inhibition Assay

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All-trans retinoic acid (ATRA), arsenic trioxide (ATO), zinc sulfate (ZnSO4), MDL28170, and ammonium chloride (NH4Cl) were purchased from Sigma-Aldrich (Oakville, ON, Canada). 4-nitroblue tetrazolium was purchased from Fisher Scientific (Ottawa, ON, Canada). Lactacystin was purchased from Enzo Life Sciences (East Farmingdale, NY, USA). Phorbol 12-myristate 13-acetate (PMA) were purchased from Tocris (Minneapolis, MN, USA). PYR-41 was purchased from BioVision (Milpitas, CA USA). Purified 20S proteasome was purchased from Boston Biochemical (Boston, MA, USA) or Enzo Life Sciences. Calpain inhibitor IV was purchased from MilliporeSigma (Etobicoke, ON, Canada). Purified 20S proteasome was purchased from Boston Biochemical or Enzo. Ubiquitin expression vectors (pRK5-HA-ubquitin-wild-type and –K0) were purchased from Addgene.
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8

Measuring cAMP levels in cells

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3-Isobutyl-1-methylxanthine (IBMX), and A23187 were purchased from Sigma-Aldrich (St. Louis, MO). Phorbol 12-myristate 13-acetate (PMA), and forskolin (FSK) were purchased from Tocris Bioscience (Ellisville, MO). Opti-MEM, antibiotic-antimycotic 100x solution, and Dulbecco’s modified Eagle’s medium (DMEM) were purchased from Life technologies (Grand Island, NY). FetalClone I serum and bovine calf serum, were purchased from Hyclone (Logan, UT). G418 was purchased from InvivoGen (San Diego, CA). The homogenous time-resolved fluorescence (HTRF) cAMP kits were purchased from Cisbio Bioassays (Bedford, MA). The tested compounds were prepared as 50 mM stocks in DMSO, and stored at −20 °C.
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9

Evaluation of Forskolin and PMA Signaling

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Forskolin and phorbol 12-myristate 13-acetate (PMA) were purchased from Tocris (Ellisville, MO). 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), and ethylenediaminetetraacetic acid (EDTA) were purchased from Fisher Scientific (Pittsburg, PA). NKY80 was purchased from EMD Millipore (Temecula, CA). Isoproterenol, A23187, adenosine monophosphate (ATP), ethyleneglycol-bis(2-aminoethylether)-N,N,N’,N’-tetraacetic acid (EGTA), 3-isobutyl-1-methylxanthine (IBMX), 5’-guanylyl-imidodiphosphoate (GppNHp), TWEEN 20, MgCl2, and 2-Amino-2-(hydroxymethyl)-1,3-propanediol (TRIS) were purchased from Sigma-Aldrich (St. Louis, MO). 2-bromo-1-(1-phenyl-4,5-dihydro-1H-benzo[d]azepin-3(2H)-yl)ethanone (W400), 6-chloro-2-(trichloromethyl)-4H-chromen-4-one (ST034307), and 4-chloro-1-methyl-3-nitroquinolin-2(1H)-one (ST072383) were purchased from TimTec (Newark, DE) and the structures of the compounds were confirmed using NMR.
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10

Calcium Signaling Reagent Compendium

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Cyclopiazonic acid (CPA), GSK2193874, GSK1016790A, phorbol 12-myristate 13-acetate (PMA), AR-C 118925XX, 2-Thio UTP tetrasodium salt, MRS2179, U-73122, NS309, and ARL-67156 were purchased from Tocris Bioscience (Minneapolis, MN). Fluo‐4-AM (Ca2+ indicator) were purchased from Invitrogen (Carlsbad, CA). 1-O-9Z-octadecenoyl-2-O-acetyl-sn-glycerol (OAG), PPADS (sodium salt), Gö-6976, JNJ-47965567, and U46619 were purchased from Cayman Chemicals (Ann Arbor, MI). Tamoxifen and apyrase were obtained from Sigma‐Aldrich (St. Louis, MO).
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