Adjusted protein lysates were supplemented with loading buffer (12% glycerol, 60 mM Na
2EDTA pH 8, 0.6% SDS, 0.003% bromphenol blue) and denatured for 10 minutes at 95 °C before SDS-PAGE. Proteins were wet-transferred to a nitrocellulose membrane at 80 V for 2 hours in transfer buffer (25 mM Tris-HCl pH 7.6, 192 mM glycine, 20% methanol, 0.03% SDS). Membranes were blocked in 5% milk powder diluted in TBST (50 mM Tris-HCl pH 7.6, 150 mM NaCl, 0.05% Tween 20), before an overnight incubation at 4 °C with the primary antibodies. After three times washing with TBST, membranes were incubated with HRP-coupled secondary antibodies for 1 hour at room temperature, followed by another three washes with TBST. Blots were developed with Pierce ECL Substrate Kit following the manufacturer’s instructions. The following antibodies were used:
anti-FLAG M2 (mouse, F1804, Sigma-Aldrich),
anti-GAPDH (mouse, ACR001P, Acris), anti-TRIM71 (rabbit, kind gift from the Yamanaka lab), anti-TRIM71 (rabbit, PAB19293, Abnova), anti-SHCBP1 (rabbit, 12672–1-AP, Proteintech),
anti-Cdkn1a/p21 (rabbit, 2947, Cell Signaling Technology),
anti-EGR1 (rabbit, 4154, Cell Signaling Technology),
anti-UPF1 (rabbit, 9435, Cell Signaling Technology),
anti-VINCULIN (mouse, V9131, Sigma-Aldrich),
anti-ubiquitin (rabbit, 3933, Cell Signaling Technology) and
anti-tubulin (mouse, T9026, Sigma-Aldrich).
Duy P.Q., Weise S.C., Marini C., Li X.J., Liang D., Dahl P.J., Ma S., Spajic A., Dong W., Juusola J., Kiziltug E., Kundishora A.J., Koundal S., Pedram M.Z., Torres-Fernández L.A., Händler K., De Domenico E., Becker M., Ulas T., Juranek S.A., Cuevas E., Hao L.T., Jux B., Sousa A.M., Liu F., Kim S.K., Li M., Yang Y., Takeo Y., Duque A., Nelson-Williams C., Ha Y., Selvaganesan K., Robert S.M., Singh A.K., Allington G., Furey C.G., Timberlake A.T., Reeves B.C., Smith H., Dunbar A., DeSpenza T J.r., Goto J., Marlier A., Moreno-De-Luca A., Yu X., Butler W.E., Carter B.S., Lake E.M., Constable R.T., Rakic P., Lin H., Deniz E., Benveniste H., Malvankar N.S., Estrada-Veras J.I., Walsh C.A., Alper S.L., Schultze J.L., Paeschke K., Doetzlhofer A., Wulczyn F.G., Jin S.C., Lifton R.P., Sestan N., Kolanus W, & Kahle K.T. (2022). Impaired neurogenesis alters brain biomechanics in a neuroprogenitor-based genetic subtype of congenital hydrocephalus. Nature neuroscience, 25(4), 458-473.