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Cdna synthesis system

Manufactured by Thermo Fisher Scientific
Sourced in United States

The cDNA Synthesis System is a laboratory equipment designed for the reverse transcription of RNA into complementary DNA (cDNA). It provides the necessary components and reagents for the efficient conversion of RNA into single-stranded cDNA, which can then be used for various downstream applications, such as gene expression analysis, cloning, or PCR amplification.

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7 protocols using cdna synthesis system

1

Quantitative RT-PCR Analysis of Adipocyte Gene Expression

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Total RNA was extracted from differentiated 3T3-L1 adipocytes and visceral adipocyte tissue using TRIzol reagent according to the manufacture's protocol (Invitrogen, Carlsbad, CA, USA). First-strand cDNA was synthesized using the cDNA synthesis system (Invitrogen). Quantitative real-time PCR was performed using the Quanti Fast SYBR Green PCR Kit (Qiagen, Valencia, CA, USA). The PCR primers used were shown in Table 1. The threshold cycle (Ct) value for each gene was normalized by β-actin.
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2

Quantifying Pain-related Genes in IVD, DRG, and Skin

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At 8 weeks after operation, five rats in each group were killed. The intact L4/5 IVD, bilateral DRG and bilateral dorsal plantar skin were observed under an upright microscope. The relative mRNA levels of pain related genes were analyzed by real-time quantitative PCR (QRT PCR). Table 1 is the primer sequence of the target gene. Total RNA was extracted by Trizol reagent. The cDNA from the samples was processed by superscript III cellsdirect cDNA synthesis system (Invitrogen, Grand Island, NY, United States). Mpx3005 instrument (stratagene, Agilent Technologies, Inc., Santa Clara, CA, United States) and faststart universal SYBR Green Master Mix (Roche Applied Science, Indianapolis, IN, United States) were used to detect the expression of GAP43, SP, CGRP, TRPM8, IL-1 β, and TNF-α in IVD, and the expression of gap43 and TRPM8 in skin and DRG were detected by quantitative PCR. The primers for rat specific genes are as follows. After 50 amplification cycles, the analysis of the chain breaking curve was carried out. Samples were analyzed independently using linreg PCR software, which directly determined the baseline, CQ value and amplification efficiency from the amplification curve.
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3

Quantitative Real-Time PCR Analysis

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Total RNA from cells was extracted with TRIzol reagent (Invitrogen) and reverse transcription was performed using the cDNA synthesis system (Invitrogen). Quantitative polymerase chain reaction (PCR) was carried out on an iCycler Real-time PCR Detection System (Bio-Rad, Hercules, CA) as previously described [20 (link)]. The primers used for quantitative PCR were listed in Supplementary Table 3.
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4

Quantitative gene expression analysis

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Total RNAs were extracted with the Ultrapure RNA kit (Cwbiotech, Beijing, China) and reverse‐transcribed to cDNA using cDNA synthesis system (Applied Biosystems, Foster City, CA, USA). The qPCR was performed using SYBR Green PCR Master Mix (Cwbiotech) in the CFX96 Touch Real‐Time PCR Detection System (Bio‐Rad, Hercules, CA, USA). The primer sequences are listed as Table 1. β‐actin was amplified as a housekeeping gene. The relative expression levels of target genes were calculated by applying ΔΔCt (cycle threshold) approach.
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5

Multiplex qRT-PCR for Inflammatory Cytokines

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Total RNA extraction was performed using the Eastep® Super Total RNA Extraction Kit, followed by reverse transcription (cDNA synthesis) with the Hifair® II 1st Strand cDNA Synthesis SuperMix for qPCR (gDNA digester plus) using a cDNA synthesis system (Applied Biosystems, Thermo Fisher Scientific, Inc., USA). Then, qRT-PCR was performed on the CFX96 Touch Real-Time PCR Detection System (Bio-Rad, Hercules, CA, USA) using a Hieff® qPCR SYBR Green Master Mix (Low Rox Plus). The primer sequences used for qRT-PCR were as follows: TNF-α F: 5’-AGCCCTGGTATGAGCCCATCTAT-3’; TNF-α R: 5’-TCCCAAAGTAGACCTGCCCAGAC-3’; IL-1β F: 5’-GCCAGTGAAATGATGGCTTATT-3’; IL-1β R: 5’-AGGAGCACTTCATCTGTTTAGG-3’; IL-8 F: 5’-AACTGAGAGTGATTGAGAGTGG-3’; IL-8 R: 5’-ATGAATTCTCAGCCCTCTTCAA-3’.
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6

Gene Expression Analysis of HUVEC and BeWo Cells

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After exposure
to NTX and 6β-naltrexol, HUVECs and BeWo cells from the microfluidic
device were quantified using the RT-PCR method. After treatment, control
and experimental samples were trypsinized, pelleted, and frozen at
−80 °C, then integrated into single-control and single-experimental
sets before homogenization in TRIzol reagent (Invitrogen, ThermoFisher)
(trypsinized-HUVECs and -BeWo cells were perfused through channels
and collected from outlets separately). Following homogenization,
RNA isolation and reverse transcription were performed using the Absolutely
RNA Miniprep kit (Stratagene) and cDNA synthesis system (Applied Biosystems),
respectively. A Qiagen RT2 SYBR Green master mix with validated
qPCR human primers (for HUVECs and BeWo) were used to determine relative
magnitudes of gene-expression levels using RT-PCR. Human 18S rRNA,
the housekeeping genes, were used to normalize each sample, and melting
curves and dissociation curves were constructed to verify the gathering
of nonspecific amplicons-free peaks, as described in manufacturer’s
recommended guidelines. The ΔCt method
developed to utilize threshold cycle (Ct) values from housekeeping gene and respective gene was used to calculate
and report the results as a fold change in gene-expression.44 (link),45 (link)
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7

Quantitative Real-Time PCR Analysis

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Total cellular RNA extraction was performed using an ultrapure RNA kit (Cwbiotech, Beijing, China) according to the manufacturer's protocol. Synthesis of complementary DNA was performed with a cDNA synthesis system (Applied Biosystems, Foster City, CA, USA). cDNA amplification was performed using a QuantiFast SYBR Green PCR Kit (Qiagen, Hilden, Germany) in the CFX96 Touch Real-Time PCR Detection System (Bio-Rad, Hercules, CA, USA). β-actin was used as an internal control. The comparative Ct method (2−ΔΔCt) was used to analyze data [28 (link)]. The sequences of primers for qPCR are as follows: β-actin forward:5′-GTATCCTGACCCTGAAGTACC-3’;

reverse: 5′-GAAGGTCTCAAACATGATCT- 3’;

HO-1 forward: 5′-TCTCTTGGCTGGCTTCCTTAC-3’;

reverse: 5′-GGCTTTTGGAGGTTTGAGACA-3’;

NQO-1 forward: 5′-TGCAGCGGCTTTGAAGAAGAAAG-3’;

reverse: 5′-TCGGCAGGATACTGAAAGTTCGC-3’.

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