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Pdonor27 vector

Manufactured by Thermo Fisher Scientific

The PDONOR27 vector is a plasmid designed for gene cloning and expression. It contains key features such as a bacterial origin of replication and antibiotic resistance marker, allowing for selection and propagation in E. coli host cells. The vector also includes a multiple cloning site for insertion of DNA fragments. Further details on the specific intended use or applications of this product are not available.

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5 protocols using pdonor27 vector

1

Visualizing MtNIP5;1 Promoter Activity

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The MtNIP5;1 promoter::β-glucuronidase (GUS) construct was generated using the Gateway System (Life Technologies, Carlsbad, USA). The promoter fragment of the candidate gene (2022 kb upstream of the MtNIP5;1 start codon, P-1174 UT848) was amplified using the primers indicated in Additional file 1, cloned in the pDONOR27 vector (Invitrogen), and transferred to the pGWB3 plasmid [67 (link)].
Gus activity assay was performed in plants 4 weeks after inoculation following the protocol described by Vernoud et al. [68 (link)] with minor modifications. Roots and nodules sections (100 μm) were incubated in a GUS buffer (0.69% PO4H2Na, 0.5 M EDTA pH 8, 30% sarkosyl, 40 μl triton X-100, and H2O) supplemented with X-Gluc (0.1 mg/ml) for 12-16 h at 28 °C in the dark, and then distained with bleach 50% and rinsed five times in H2O. Afterwards, sections were observed with a Leica DM IRB microscope.
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2

MtNIP5;1 Promoter-Driven GUS Assay

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The MtNIP5;1 promoter:: β-glucuronidase (GUS) construct was generated using the Gateway System (Life Technologies, Carlsbad, USA). The promoter fragment of the candidate gene (2.022 kb upstream of the MtNIP5;1 start codon, P - 1174 UT848 ) was ampli ed using the primers indicated in Additional le 1, cloned in the pDONOR27 vector (Invitrogen) and transferred to the pGWB3 plasmid (65).
Gus activity assay was performed in plants 4 weeks after inoculation following the protocol described by (66) with minor modi cations. Roots and nodules sections (100 µm) were incubated in a GUS buffer (0,69% PO 4 H 2 Na, 0,5 M EDTA pH 8, 0, 30% sarkosyl, 40 µl triton X-100 AND H 2 O) supplemented with X-Gluc (0,1 mg/ml) for 12-16 h at 28 °C in the dark, and then distained with bleach 50% and rinsed ve times in H 2 O. Afterwards, sections were observed with a Leica DM IRB microscope.
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3

Quantifying MtNIP5;1 Promoter Activity

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The MtNIP5;1 promoter::β-glucuronidase (GUS) construct was generated using the Gateway System (Life Technologies, Carlsbad, USA). The promoter fragment of the candidate gene (2,022 kb upstream of the MtNIP5;1 start codon, P -1174 UT848 ) was ampli ed using the primers indicated in Additional le 1, cloned in the pDONOR27 vector (Invitrogen), and transferred to the pGWB3 plasmid (68).
Gus activity assay was performed in plants 4 weeks after inoculation following the protocol described by Vernoud et al. (69) with minor modi cations. Roots and nodules sections (100µm) were incubated in a GUS buffer (0.69% PO 4 H 2 Na, 0.5M EDTA pH 8, 30% sarkosyl, 40µl triton X-100, and H 2 O) supplemented with X-Gluc (0.1 mg/ml) for 12-16h at 28°C in the dark, and then distained with bleach 50% and rinsed ve times in H 2 O. Afterwards, sections were observed with a Leica DM IRB microscope.
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4

Visualizing MtNIP5;1 Promoter Activity

Check if the same lab product or an alternative is used in the 5 most similar protocols
The MtNIP5;1 promoter::β-glucuronidase (GUS) construct was generated using the Gateway System (Life Technologies, Carlsbad, USA). The promoter fragment of the candidate gene (2,022 kb upstream of the MtNIP5;1 start codon, P -1174 UT848 ) was ampli ed using the primers indicated in Additional le 1, cloned in the pDONOR27 vector (Invitrogen), and transferred to the pGWB3 plasmid (68).
Gus activity assay was performed in plants 4 weeks after inoculation following the protocol described by Vernoud et al. (69) with minor modi cations. Roots and nodules sections (100µm) were incubated in a GUS buffer (0.69% PO 4 H 2 Na, 0.5M EDTA pH 8, 30% sarkosyl, 40µl triton X-100, and H 2 O) supplemented with X-Gluc (0.1 mg/ml) for 12-16h at 28°C in the dark, and then distained with bleach 50% and rinsed ve times in H 2 O. Afterwards, sections were observed with a Leica DM IRB microscope.
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5

Visualizing MtNIP5;1 Promoter Activity

Check if the same lab product or an alternative is used in the 5 most similar protocols
The MtNIP5;1 promoter::β-glucuronidase (GUS) construct was generated using the Gateway System (Life Technologies, Carlsbad, USA). The promoter fragment of the candidate gene (2,022 kb upstream of the MtNIP5;1 start codon, P -1174 UT848 ) was ampli ed using the primers indicated in Additional le 1, cloned in the pDONOR27 vector (Invitrogen) and transferred to the pGWB3 plasmid (68).
Gus activity assay was performed in plants 4 weeks after inoculation following the protocol described by Vernoud et al. (69) with minor modi cations. Roots and nodules sections (100µm) were incubated in a GUS buffer (0.69% PO 4 H 2 Na, 0.5M EDTA pH 8, 30% sarkosyl, 40µl triton X-100 and H 2 O) supplemented with X-Gluc (0.1 mg/ml) for 12-16h at 28°C in the dark, and then distained with bleach 50% and rinsed ve times in H 2 O. Afterwards, sections were observed with a Leica DM IRB microscope.
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