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59 protocols using novostar

1

Caspase-3/7 Activation Assay in Macrophages

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Caspase-3/7 activation was assessed with Apo-ONE Homogenous Caspase-3/7 Assay (Promega, Madison, WI). Macrophages (2.5 × 104 cells/ml RPMI 1640, 5% FCS) were seeded in black 96-well plates and let to adhere for 1 hour. After incubation with test compounds the manufactures instructions were followed and fluorescence was measured (excitation 485 nm, emission 530 nm, Novostar, BMG Labtechnologies, Offenburg, Germany).
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2

Mitochondrial ROS Measurement in Glomeruli

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Isolated glomeruli were incubated with 5 μM MitoSOX (M36008, Invitrogen, Inc., United States) for 25 min at room temperature with continuous mixing on a rotating shaker. Then, MitoSOX fluorescence (510-nm excitation/580-nm emission) was measured in multiple 96-well plates using a fluorescence plate reader (Novostar, BMG LabTechnologies, Offenburg, Germany). Fluorescence was normalized to 1 mg of protein.
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ATPase Activity Assay of ATP13A2

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The ATPase activity of ATP13A2 in microsomes was measured using a luminescence-based ADP detection assay (ADP Glo Max assay; Promega). Reactions were performed in a final volume of 5 µL containing 50 mM MOPS-KOH pH 7.0, 100 mM KCl, 11 mM MgCl2, 1 mM DTT, 0.02% DDM, 1 μg microsomes, 5 mM ATP, and various concentrations of spermine (SPM). Before initiating the reaction by addition of ATP, microsomes were first allowed to equilibrate in the reaction buffer for 1.5 h on ice and for 10 min at 37 °C. The ATPase reaction was performed for 15 min at 37 °C upon addition of ATP and was terminated by heating samples for 5 min at 80 °C. The reaction was then mixed with 5 µL of ADP-Glo Reagent for 60-80 min at 23°C, followed by addition of 10 uL of ADP-Glo Max Detection Reagent for 60 min. Luminescence was measured in a 384 multi-well plate using a luminometer (NOVOstar; BMG Labtech). Raw luminescence values were converted to ADP amounts based on a standard curve generated with 5 mM ATP/ADP mixtures at varying ratios but without microsomes. Averages and s.e.m. calculated. Averages were corrected for the basal ATP hydrolysis activities of microsomes by subtracting the value at 0.001 mM SPM. Dose-response curves were generated using the R software with the drc (Ritz et al., 2015) and ggplot2 (https://ggplot2.tidyverse.org) packages.
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In Vitro Permeability Assay

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An in vitro permeability assay was performed as described previously. Briefly, HLMVECs (1 × 105) were cultured in collagen-coated transwell inserts (Corning, Corning, NY, USA) to form a monolayer. Subsequently, 70 KDa (250 µg mL−1) tetramethylrhodamine-dextran (Invitrogen, Carlsbad, CA, USA) was added to the transwell insert. The medium was removed from the lower compartment at 10, 20, 60, and 90 min. The permeability rate was determined by measuring the tetramethylrhodamine-dextran fluorescence intensity of the medium in the lower compartment using a NOVOstar microplate reader (BMG Labtech, Ortenberg, Germany).
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5

Quantifying NTCP Expression via Myrcludex-B

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Cells were seeded into 96 wells plate (Corning; 734–1609) three days before staining. Cells were stained with 0.02μM Myrcludex-B—FITC for 30min at 37°C. Myrcludex B-Fitc intensity was measured using a NOVOstar microplate reader (BMG Labtech GmbH, Offenburg) at λex / λem = 483–14 nm/ 530–30 nm. The option orbital averaging was set at a diameter of 3mm. Background fluorescence was subtracted and results were plotted as percentage of NTCP WT.
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Mitochondrial Membrane Potential Assay

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Mitochondrial membrane potential was measured by the mitochondrial uptake of 20 μm TMRM in a reaction containing 25 mm succinate. The decline in the buffer TMRM concentration was monitored at 575 nm with fluorescent spectrophotometer (NOVOstar, BMG Labtech). Relative membrane potentials were reported for tspo −/−, tspo +/− mitochondria relative to control +/+ mitochondria assayed in parallel wells.
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7

Measuring Cellular and Mitochondrial ROS

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Mitochondrial and cellular ROS levels were measured by using fluorescent probes in 96 well black plates (Greiner Bio-One, Leipzig, Germany; 655090) as previously described [65 (link),66 (link)]. The cells were cultured and treated as above indicated. To measure mitochondrial ROS levels, at the end of incubation, the medium was changed to Hank’s solution (136.9 mM NaCl, 5.4 mM KCl, 1.3 mM CaCl2, 3.7 mM NaH2PO4, 0.4 mM KH2PO4, 4.2 mM NaHCO3, 0.7 mM MgSO4, 5.5 mM D-glucose and 10 mM HEPES) containing 5 µM of MitoSOX (stock prepared as 5 mM solution in DMSO) and incubated at 37 °C in the 5% CO2/air incubator for 10 min. Cellular ROS levels were measured by using the fluorescent probe DCFH-DA in Hank’s solution containing 10 µM of the fluorescent probe (stock prepared as 20 mM solution in DMSO) and incubated at 37 °C in the 5% CO2/air incubator for 40 min. Then, cells were washed with 0.2 mL of Hank’s solution three times and the fluorescence was measured in a fluorescence plate reader (NOVOstar, BMG LABTECH GmbH, Ortenberg, Germany) with incubation at 37 °C. Filters were Ex = 510 ± 10 nm, Em = 580 ± 10 nm for MitoSOX, and Ex = 510 ± 10 nm, Em = 540 ± 10 nm for DCFH-DA, and readings were performed from the bottom of the plate). As positive control for the technique we used rotenone, a specific inhibitor of mCx-I, for mitochondrial ROS levels, and H2O2 for cellular ROS levels.
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8

Trypsin Activity and Localization in IBS Biopsies

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Basal media were concentrated 3 times using Vivaspin 500 (Dutcher). Trypsin activity was measured in basal and apical medium with the substrate N-p-Tosyl-GPR-amino-4-methylcoumarin hydrochloride (0.1 mM) in 50 mM Tris, 10 mM CaCl2. Substrate degradation was calculated by the change in fluorescence (excitation: 355 nm, emission: 460 nm), measured over 30 min at 37°C on a microplate reader NOVOstar (BMG Labtech). OCT-included biopsies of control and patients with IBS were cryostat sectioned (8 μm thickness) and washed with PBS, 2% Tween-20. All samples were incubated overnight at 37°C with the substrate N-p-Tosyl-GPR-amino-4-methylcoumarin hydrochloride (50 μg/mL, Sigma) in 0.3% low melting agarose. Nuclei were stained with Topro3 (Invitrogen). Images were analysed with ImageJ software.
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9

Intracellular ROS Measurement with DCFH-DA

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The intracellular ROS levels were measured with the fluorescent probe DCFH-DA (2′,7′-dichlorofluorescein diacetate) according to previous work [33 (link)]. Two plates were prepared to evaluate the ROS levels in cells that were preincubated with 400 μg/mL AOS for 4 and 24 h or were not preincubated. GES-1 cells (10,000 cells/mL) were seeded in 96-well plates (SPL, TCL group) and incubated for 24 h. A control with only medium and a control with 5 mM of antioxidant N-acetyl cysteine (NAc) were placed onto each plate. After the treatment, the cells were washed with PBS 1x, incubated with 10 μM DCFH-DA for 30 min at 37 °C, washed three times with PBS 1x, and exposed to different H2O2 concentrations (50, 100, and 200 μM) for 3 h. Finally, the fluorescence intensity of DCFH-DA was measured by NOVOstar (BMG LabTech, Ortenberg, Germany) with excitation and emission wavelengths of 485 nm and 535 nm, respectively. The fluorescence was expressed as a fold change, considering control with only medium as 1 unit.
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10

Calcium Signaling Analysis of Rat TRPV1 in CHO Cells

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CHO (Chinese hamster ovary) cells were obtained from Evrogen company (http://evrogen.ru). The CHO cell lines stably expressing rat TRPV1 was generated using T-Rex System (Invitrogen) according to the manufacturer’s instructions and fluorescent assays were performed using NOVOstar (BMG LABTECH, Germany) as described [31 (link)]. CHO cells stably expressing rat TRPV1 were seeded into black-walled, clear-bottomed 96-well plates at a density of 75,000 cells per well (complete media without antibiotics and containing 1 μg/ml tetracycline to induce channel expression) and were cultured overnight at 37°C. The cells were then loaded with the cytoplasmic calcium indicator Fluo-4AM using Fluo-4 Direct Calcium Assay Kits (Invitrogen) and incubated in the dark at 37°C for 60 minutes and then at 25°C for 60 minutes. The buffer alone (control) or APHC-polypeptides were added to the cells. Changes in cell fluorescence (λex = 485 nM, λem = 520 nM) were monitored before and after the addition of TRPV1 agonist (capsaicin or 2APB). The measurements were performed at pH 7.4 and 25°C.
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