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Beckman optima tlx ultracentrifuge

Manufactured by Beckman Coulter
Sourced in United States

The Beckman Optima TLX Ultracentrifuge is a high-performance laboratory instrument designed for separating and purifying macromolecules, cells, and other biological samples. It utilizes advanced centrifugation technology to achieve high-speed rotation and generate the necessary force for effective separation and isolation of target components.

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8 protocols using beckman optima tlx ultracentrifuge

1

Encapsulation of Calcein in Liposomes

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The fluorophore calcein (from Sigma-Aldrich) was solubilized at a concentration of 100 mM with 50 mM KPi, and the pH was adjusted to 7.0 using aliquots of 4 M KOH. The stocked vesicles (2 mg of lipid) were pelleted by ultracentrifugation (280,000 × g, 4 °C, 20 min with a TLA 100.1 rotor in a Beckman Optima TLX Ultracentrifuge; Beckman Coulter Life Sciences, Indianapolis, IN) and resuspended in 0.9 mL of 89 mM KPi, pH 7.0. calcein was added to the liposome solution at a self-quenching concentration (10 mM) and enclosed in the vesicles by 3 cycles of rapid freezing in liquid nitrogen and thawing at 40 °C (or 60 °C for mixtures containing DPPC). Thus, the osmolality of the liposomutle lumen (filled with 10 mM calcein plus 89 mM KPi pH 7.0) is ~190 mOsmol/kg, which equals the osmolality of the assay buffer (100 mM KPi pH 7.0). After extrusion through a 200 nm polycarbonate filter at 20 °C (or 60 °C for mixtures containing DPPC) to homogenize the vesicles, they were eluted through a 22-cm-long Sephadex-G75 (Sigma-Aldrich) column pre-equilibrated with the assay buffer to remove the external calcein. The collected 1 mL fractions containing the calcein-filled vesicles were identified by eye using an ultraviolet lamp (for fluorophore excitation) and diluted in a total volume of 10 mL of the assay buffer.
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2

Skeletal Muscle Protein Extraction

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Skeletal muscle samples were homogenized in Lysis Buffer containing 20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 2.5 mM Na2H2P2O7, 1 mM b-CH3H7O6PNa2, 1 mM Na3VO4, 1 mM PMSF, 1 mg/mL leupeptin, and 1% (v/v) Triton X-100 (Sigma-Aldrich, St. Louis, MO, USA) using an UltraTurrax homogenizer, and then centrifuged at 16,000× g in a Beckman Optima TLX Ultracentrifuge (Beckman Coulter S.p.A., Milan, Italy) for 15 min at 4 °C. The supernatants were ultra-centrifuged at 40,000× g in a Beckman Optima TLX Ultracentrifuge for 20 min at 4 °C. The protein concentrations of the supernatants were determined by the method described previously.
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3

Protein Extraction from White Adipose Tissue

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Tissue samples of vWAT were homogenized in Lysis Buffer containing 20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 2.5 mM Na2H2P2O7, 1 mM b-CH3H7O6PNa2, 1 mM Na3VO4, 1 mM PMSF, 1 mg/mL leupeptin, and 1% (v/v) Triton X-100 (Sigma-Aldrich, St. Louis, MO, USA) using an UltraTurrax homogenizer, and then centrifuged at 16,000× g in a Beckman Optima TLX Ultracentrifuge (Beckman Coulter S.p.A., Milan, Italy) for 15 min at 4°C. The supernatants were then ultracentrifuged at 40,000 x RPM in a Beckman Optima TLX Ultracentrifuge for 20 min at 4°C.The protein concentrations of the supernatants of the centrifuged lysates were determined using Bio Rad’s DC method (Bio Rad Laboratories, s.r.l., Segrate, Italy).
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4

Liver Protein Extraction and Quantification

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The liver tissue was homogenized in lysis buffer containing 20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 2.5 mM Na2H2P2O7, 1 mM b-CH3H7O6PNa2, 1 mM Na3VO4, 1 mM PMSF, 1 mg/mL leupeptin, and 1% Triton X-100 (Sigma-Aldrich, St. Louis, MO, USA) using an Ultra-Turrax homogenizer, and then centrifuged at 15,000 × g in a Beckman Optima TLX Ultracentrifuge (Beckman Coulter S.p.A., Milan, Italy) for 15 min at 4°C. The supernatants were then ultracentrifuged at 40,000 × g in a Beckman Optima TLX Ultracentrifuge for 15 min at 4°C. For determination of liver content, the supernatants were used without further processing. The protein concentration in supernatants and cleared lysates was determined using the Bio-Rad DC method.
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5

Liver Mitochondrial Protein Analysis

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Liver tissue was homogenized in lysis buffer containing 20 mmol Tris-HCl (pH 7.5), 150 mmol NaCl, 1 mmol EDTA, 1 mmol EGTA, 2.5 mmol Na2H2P2O7, 1 mmol b-CH3H7O6PNa2, 1 mmol Na3VO4, 1 mmol PMSF 1 mg·mL−1 leupeptin, and 1% Triton X-100 (Sigma-Aldrich, St. Louis, MO, USA) using an Ultra Turrax homogenizer and then centrifuged at 15,000× g in a Beckman Optima TLX Ultracentrifuge (Beckman Coulter S.P.A., Milan, Italy) for 15 min at 4 °C. The supernatants were then ultracentrifuged at 40,000× g in a Beckman Optima TLX Ultracentrifuge for 15 min at 4 °C. The protein concentration in supernatants and cleared lysates was determined using the Bio-Rad DC method. The protein levels of POLG, PGC1α, NRF1 and TFAM were determined in the supernatants of ultracentrifuged lysates using polyclonal antibodies (Novus Biologicals, Littleton, CO, USA; Millipore, Billerica, MA, USA; Abcam, Cruz Biotechnology, Santa Cruz, CA, USA, respectively). β-actin antibody (Sigma-Aldrich) was used as control.
Catalase protein levels were measured on protein extracts from isolated liver mitochondria using a polyclonal antibody (Sigma-Aldrich) and a voltage-dependent anion channel (Santa Cruz Biotechnology, Santa Cruz, CA, USA) was used as control.
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6

Tissue Homogenization and Protein Extraction

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Tissue samples of liver, skeletal muscle and vWAT were homogenized in Lysis Buffer containing 20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 2.5 mM Na2H2P2O7, 1 mM b-CH3H7O6PNa2, 1 mM Na3VO4, 1 mM PMSF, 1 mg/mL leupeptin, and 1% (v/v) Triton X-100 (Sigma-Aldrich, St. Louis, MO, United Statesa) using an UltraTurrax homogenizer, and then centrifuged at 16.000 × g in a Beckman Optima TLX Ultracentrifuge (Beckman Coulter S.p.A., Milan, Italy) for 15 min at 4°C. The supernatants were then ultra-centrifuged at 40.000× RPM in a Beckman Optima TLX Ultracentrifuge for 20 min at 4°C. The protein concentrations of the supernatants of the centrifuged lysates were determined using the Bio Rad’s DC method (Bio Rad Laboratories, s.r.l., Segrate, Italy).
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7

Quantifying Skeletal Muscle H2O2 Levels

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H2O2 was measured in skeletal muscle samples using the Hydrogen Peroxide Assay Kit (Colorimetric/Fluorimetric) (Abcam, ab102500). Briefly, skeletal muscle tissues (40 mg) were homogenized rapidly in H2O2 Assay buffer (supplied from the kit) using an UltraTurrax homogenizer and then centrifuged at 10,000× g in a Beckman Optima TLX Ultracentrifuge (Beckman Coulter S.p.A., Milan, Italy) for 2–5 min at 4 °C. Subsequently, a deproteinization protocol was performed. For the deproteinization protocol, we used perchloric acid (PCA) at 4 M, and the excess PCA was precipitated by adding ice-cold 2 M KOH, which equals 34% of the supernatant. After neutralization, the pH was adjusted to 6.5–8 by adding 0.1 M KOH or PCA. The sample was centrifuged at 13,000× g for 15 min at 4 °C. Subsequently, we prepared a master mix of the reaction mix (Assay Buffer, OxiRed Probe, Developer Solution V/HRP) and added 50 µL of the Reaction Mix and 50 µL of the sample to each well. After incubation for 10 min at room temperature, fluorescence was measured using a microplate reader, BioTek Sinergy H1 (Ex/Em = 535/587 nm) (Agilent, Santa Clara, CA, USA).
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8

Cellular Fractionation for Nuclear Extracts

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All extraction procedures were carried out at 4°C. About 2–10 × 106 cells were recovered by centrifugation at 500 × g for 5 min and washed twice with cold PBS. Cell pellets were resuspended in a hypotonic buffer (10mM HEPES pH 7.9 containing 1.5mM MgCl2, 10mM KCl, 0.5mM DTT, 1 mM PMSF, 20 μg/ml CLAP and phosphatase inhibitor cocktail 2 and 3 at a 1:100 dilution) and incubated for 15 minutes at 4°C. NP40 was then added to a final concentration of 0.5% and the samples were gently vortexed. Samples were centrifuged at 2,800 × g in a tabletop microfuge to separate nuclei-enriched pellets from crude cytosolic supernatants. These supernatants were withdrawn and centrifuged again at 135,000 × g in a Beckman Optima TLX Ultracentrifuge (Beckman Coulter) to obtain clean cytosolic fractions. The nuclei-enriched pellets were resuspended in a high-salt buffer (20 mM HEPES pH 7.9 containing 1.5 mM MgCl2, 420 mM NaCl, 0.2 mM EDTA, 25% v/v glycerol, 0.5 mM PMSF and 20 μg/ml CLAP and phosphatase inhibitor cocktail 2 and 3 at a 1:100 dilution). After incubating the nuclei for 30 minutes with vigorous agitation, nuclear extracts were recovered after centrifugation for 10 minutes at 10,000 × g in a tabletop microfuge.
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