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23 protocols using ma5 12960

1

Cardiac and Neuronal Protein Immunofluorescence

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For cardiac troponin and peripherin immunofluorescence, cells were fixed in 4% paraformaldehyde in phosphate buffer solution (Thermo Fisher Scientific; Catalog # AAJ19943K2) for 15 min and permeabilized with 0.5% Triton X‐100. Blocking was done with 5% boiled normal goat serum in PBS/0.5% Triton X‐100. Primary and secondary antibodies were diluted in 2.5% (wt/vol) bovine serum albumin (BSA)/PBS/0.5% Triton X‐100. Specimens were incubated with primary antibodies Cardiac troponin (Catalog # MA5‐12960, Invitrogen), Peripherin (Catalog # AB1530, EMD Millipore) at 1:500 overnight, washed three times for 5–10 min, and incubated with fluorescently conjugated secondary antibodies for 2–4 h as described in detail elsewhere (Narkar et al., 2021 (link)). All washes were performed with PBS/0.5% Triton X‐100. DNA was counterstained with DAPI or Hoechst 33342 (Thermo Fisher Scientific). Vectashield (Vector Laboratories) was used for mounting. Troponin and peripherin images were acquired with the Olympus FV3000 Laser scanning microscope (20X air and 60X oil immersion objectives).
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2

Immunofluorescence Assay of Activated Fibroblasts

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For the immunofluorescence assay, human heart samples previously fixed with 0.5% glutaraldehyde and 5% paraformaldehyde were used. These samples were later placed in CryoBloc (070130, Diapath) and stored at − 80 °C. The cryostat was used to obtain two sections of 7 µm thick from each sample, and they were deposited on a slide. These sections were fixed with 4% paraformaldehyde and embedded for 30 min in 10 mM sodium citrate buffer + 0.05% Tween (pH 6) at 80 °C. Then, they were incubated for 1 h with a blocking solution (2% BSA in PBS buffer with Triton X-100 0.1%). To assess the localization of activated fibroblasts, sections were double stained with primary antibody for fibroblast activation protein (1:50 dilution, ab207178, Abcam) and primary antibody for cardiac troponin T (1:50 dilution, MA5-12960, Invitrogen). As secondary antibodies, Alexa Fluor 488 (1:400 dilution, ab150077, Abcam) and Alexa Fluor 594 (1:200 dilution, A-21201, Invitrogen) were used. The coverslips were mounted using mounting medium with DAPI (ab104139, Abcam). Digital images were captured on a Nikon H550S microscope.
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3

Cardiac Myocyte Characterization by Flow Cytometry

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The hiPSC-CMs were harvested by trypsinization and used to prepare a single-cell suspension in PBS (1 × 106 cells/mL). Then, the cells were fixed using 4% paraformaldehyde at room temperature for 20 min and washed twice with Flow Cytometry Perm Buffer (Proteintech). Then, the cells were incubated with primary antibodies against cTnT (1:100, MA5-12960; Invitrogen, Carlsbad, CA, USA) or α-actinin (1:50, MA5-36095; Invitrogen) for 1 h at 4 °C. Mouse IgG1 served as the negative control. After centrifugation and two washes with 1 × PBS, the cells were incubated with anti-mouse IgG Alexa Fluor 488 or anti-mouse IgG Alexa Fluor 647 for 30 min at 4 °C. After centrifugation and two washes with 1 × PBS, cells were resuspended in 500 μL of 1 × PBS and analyzed by flow cytometry (BD FACSymphony A3, Franklin Lakes, NJ, USA). Data analysis was performed using NovoExpress (v.1.5.4; Agilent, Santa Clara, CA, USA).
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4

Immunofluorescent Imaging of Cardiac Markers

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Tissues were fixed in formalin (Sigma) for 15 min and washed with DPBS three times before storing in 70% ethanol. The tissues were blocked with 3% BSA in DPBS for one hour before incubating with mouse anti-cardiac troponin T (cTnT, MA5-12960, Invitrogen) and rabbit anti-alpha smooth muscle actin (α-SMA, EPR5368, Abcam) primary antibodies overnight. Tissues were then incubated for 1hr with anti-rabbit Alexa Fluor 488 and anti-mouse Alex Fluor 647 secondary antibodies (Thermofisher) before mounting onto glass slides with antifade mountant and DAPI (P36962, Invitrogen). Tissues were imaged on a Leica confocal microscope.
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5

Immunocytochemical Staining of Cardiac Tissue

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Immunocytochemical staining was performed to confirm the presence of cardiomyocytes and vascular networks in the cardiac tissue constructs. The cells were fixed with 70% ethanol for 20 min on day 9 after cardiomyocyte seeding. The cells were stained with cardiomyocyte-specific monoclonal mouse anti-troponin T antibody (1:100, Invitrogen, MA5-12960, lot UF2730196) and endothelial cell–specific polyclonal rabbit anti–von Willebrand factor (1:100, Dako, A0082, lot 20067357) at +4°C overnight. Secondary antibodies anti-mouse IgG Alexa Fluor 488 (Invitrogen, A21202, lot 2018296) and anti-rabbit IgG Alexa Fluor 594 (Invitrogen, A21207, lot 2066086) were incubated for 45 min at RT. The cells were imaged using an Olympus IX51 inverted fluorescence microscope using a ×10 objective. The images were prepared with Photoshop CC (Adobe).
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6

Immunostaining of Cardiac Markers

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Differentiated ES cells were plated on glass slides at an appropriate density. Then they were fixed with 4% paraformaldehyde (pH 7.4) for 10 min, permeabilized with 0.1% Triton dissolved in PBS for 10 min at RT, and incubated overnight in blocking solution containing antibody against NKX2-5 (sc-376565, Santa Cruz) or TNNT2 (MA5-12960, Invitrogen). A second antibody conjugated with TRITC or FITC were used for immunostaining. All immunofluorescence images were captured by a laser scanning confocal microscope system (LSM710, Zeiss).
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7

Multiparametric Flow Cytometry of iPSCs and iPSC-CMs

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iPSCs were pulsed with 20 µM EdU for 1 h using the Click-iT EdU Alexa Fluor 647 Flow kit (Thermo Fisher C10424). iPSC-CMs were pulsed with 10 µM EdU for 24 h. Cells were stained with LIVE/DEAD Fixable Red Dead Cell Stain (Thermo Fisher L23102) using the manufacturer’s protocol before fixing in 4% paraformaldehyde. Click-iT labeling of EdU was performed using the manufacturer’s protocol. iPSCs were stained with OCT4 (Millipore MAB4419; 1:100 dilution) and iPSC-CMs were stained with cTnT (Thermo Fisher MA5-12960, 1:200 dilution) for 1 h at room temperature. Cells were incubated with goat-anti-rabbit Alexa 488 (Jackson Immuno Research 111-546-045, 1:250 dilution) for 30 min at room temperature. DNA was stained with FxCycle Violet Flow Reagent (Thermo Fisher R37166) using the manufacturer’s protocol. Four-color flow cytometry analysis was performed on the SONY SH800 using unstained samples and fluorescence minus one controls to set detectors. FlowJo v10 was used to analyze flow cytometry data.
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8

Cardiac Explant Myocardial Quantification

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Transverse sections from cardiac explants were co-stained with cTnT (Thermo MA5-12960) (demarcating myocardial cells) and Hoechst nuclear counterstain. ImageJ was used to calculate the total area of the compact myocardium and the number of cells within each of these regions was counted. Data are reported as an average of 2 to 4 sections from each condition ± standard error of the mean (SEM) measured in three independent replicates. Statistical differences between conditions were analyzed using Student’s t-test.
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9

Multicolor Immunostaining of Cardiac Microtissues

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Microtissues were washed 3× times with PBS and then fixed overnight in 10% formalin at 4 °C. Following 3× washes with PBS, fixed microtissues were incubated for 4 h in permeabilization solution containing 0.2% Triton X-100 in PBS supplemented with 2% BSA, 320 mM sucrose and 6 mM magnesium chloride. Before immunostaining, microtissues were blocked in PBS containing 2% BSA for 2 h. Next, microtissues were stained with primary antibodies for cardiac troponin-t (cTnT) (Thermofisher MA5-12960, 1:200) and vimentin (Thermofisher MA5-16409; 1:200) to visualize cardiomyocytes and fibroblasts, respectively. To visualize sarcomeres, samples were stained with anti-sarcomeric alpha actinin antibody (abcam 137346; 1:200). To visualize gap junctions, samples were stained with connexin-43 (Thermofisher 71-0700; 1:200). Primary antibodies were diluted in PBS containing 3% BSA and hydrogels were stained at 4 °C for 72 h. Next, the secondary antibodies Alexa Fluor-488/594/647 IgG H&L (1:200; Abcam ab150077, ab150116, ab150079) were added at 4 °C for 72 h. Finally, samples were washed 3× in PBS followed by DAPI staining (1:2000; Invitrogen D1306, in PBS) for 30 min at room temperature. A Leica SP5 confocal was used to acquire z-stack images.
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10

Detecting Apoptosis in Leukemia Cells

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Jurkat cells, DND41, MOLT4, purified leukemia cells, and tissue sections were fixed by 4% paraformaldehyde (PFA). Anti‐γ‐H2AX (rabbit, 1:100, 7631S, Cell Signaling Technology) or anti‐cTnT (MA5‐12960, ThermoFisher) were stained, followed by a donkey anti‐rabbit AF488 (1:500, A21206, Thermo Scientific) secondary antibody staining. The apoptotic cardiomyocytes were detected by TUNEL assay according to the manufacturer's instruction (C1088, Beyotime). For high‐resolution three‐dimensional images, z‐stack collected images from Nikon C2plus were analyzed with ImageJ (National Institutes of Health).
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