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22 protocols using ab69090

1

Western Blot Analysis of Oxidative Stress Markers

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Tissue samples were homogenized in lysis buffer (50 mM of Tris–HCl, 150 mM of NaCl, 2 mM of EDTA, 2 mM of EGTA, 0.2% Triton X-100, 0.3% NP-40, 0.1 mM of PMSF, and 1 µg/ml of pepstatin A) and then separated by 10% SDS-PAGE under reducing conditions. After electrophoresis, samples were transferred to PVDF membranes (IPVH00010, Millipore, Bedford, MA, USA), blocked with 5% skimmed milk in TBS/0.5% v/v Tween 20 for 1 h, washed with TBS/Tween, and incubated with anti-HO-1 (1:2000 dilution, ADI-OSA-150-D Enzo Life Technologies), rabbit anti-ferritin light chain (1:500 dilution, ab69090, Abcam), rabbit anti-ferritin heavy chain (1:1000 dilution, Thermo Fisher 701934), and anti-phospho Nrf2 (1:1000 dilution, bs-2013R, Bioss). Antibodies were diluted in 5% milk TBS/Tween. Blots were washed with TBS/Tween and incubated with anti-rabbit horseradish peroxidase-conjugated secondary antibody (1:2000, Amersham, Aylesbury, UK). After being washed with TBS/Tween, blots were developed with the chemiluminescence method (ECL Luminata Crescendo, WBLUR0500, Millipore) and scanned using the ImageQuant LAS-4000 (GE Healthcare). Blots were then probed with mouse monoclonal anti-α-tubulin antibody (1:5000, T6199, Sigma, MO, USA), and levels of expression were corrected for minor differences in loading. Quantification was expressed as arbitrary densitometric units (AU).
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2

Visualizing Fungal Infection in Mouse Trachea

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Fresh tracheal cryosections from mice infected with Af-GFP were fixed with 4% paraformaldehyde in PBS pH 7.4 for 15 min at room temperature. Tissue was then permeabilized with 0.1% Triton X-100 in PBS for 10 min at room temperature. Then, tracheas were then incubated with 1% BSA, 22.52 mg/mL glycine in PBST (PBS + 0.1% Tween 20) for 30 min to block unspecific binding of the antibodies. Tissue was incubated with primary antibody ferritin (ab69090; Abcam, Cambridge, UK) in 1% BSA in PBST for 1 h at room temperature. Following the tissue was incubated with secondary antibody goat anti-Rabbit IgG Texas Red (ab6719; Abcam, Cambridge, UK) in 1% BSA for 1 h at room temperature in the dark. Tracheas were then mounted using ProLong Gold (P10144; InvitrogenTM,,Waltham, MA, USA). Images and z stacks were taken using a confocal microscope (Leica Stellaris 8). Fluorescence was quantified by ImageJ.
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3

Ferritin Light Chain Protein Analysis

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Cytosolic fractions of liver tissue lysed in RIPA buffer were used to investigate ferritin light chain protein levels. Protein concentrations were determined with the BCA assay (BioRad, Munich, Germany) and 60 μg protein of each sample was mixed with loading buffer, denatured at 95 °C for 5 min, and separated on 4–20% MINI PROTEAN® TGX-Stain-Free™ gels (BioRad, Munich, Germany). Subsequently, proteins were activated by UV-exposure for 5 min and then transferred onto a PVDF membrane using the Trans Blot® Turbo™ System (BioRad, Munich, Germany). The membrane was blocked with 3% skim milk dissolved in TBS+0.05% Tween-20 (TBS/T) for at least 2 h and probed with a ferritin light chain (ab69090 Abcam, Cambridge, UK; 1:1000) antibody at 4 °C overnight. After incubation with a horseradish-peroxidase-conjugated secondary anti-rabbit antibody, the bands were visualised by using ECL reagent (Thermo Scientific, Schwerte, Germany) in a ChemiDoc XRS system (BioRad, Munich, Germany). Normalisation was carried out with reference to the total lane protein as determined using the stain-free technology by Bio-Rad.
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4

Evaluation of Ferroptosis Markers in Cells

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Brucine, ferric ammonium citrate (FAC), and glutathione (GSH) were all purchased from Sigma-Aldrich (Saint Louis, MO, USA). Ferrostatin-1 (Fer-1), liproxastin-1, and 4-phenylbutyrate (4-PBA) were all obtained from Selleck Chemicals (Houston, TX, USA). Primary antibodies against GRP78 (ab12685), ATF3 (ab254268), ATF4 (ab184909), GPX4 (ab125066), cystine-glutamate antiporter xCT (ab175186), ferritin light chain (ab69090), ferritin heavy chain (ab75972), FPN (ab78066), TF (ab82411), TFR (ab1086), ATG5 (ab108327), LC3B (ab192890), p62 (ab109012), Beclin-1 (ab207612), superoxide dismutase 1 (SOD1) (ab51254), and catalase (ab209211) were all from Abcam (Cambridge, UK). Anti-PERK (#5683) and anti-β-Actin (#4970) antibodies were from Cell Signaling Technology (Beverly, MA, USA). The other reagents were purchased from Sigma-Aldrich.
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5

Antibody Profiling for Cellular Mechanisms

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Antibodies against COL1A1 (ab34710), COL4A1 (ab6586), α-SMA (ab5694/ab7817), vimentin (ab92547), p75NTR (ab52987), desmin (ab32362), xCT (ab175186), Ptgs2 (ab179800), GPx4 (ab125066), FTH1 (ab65080/ab183781), FTL (ab69090), Atg5 (ab108327), Atg7 (ab133528), LC3B (ab48394), and 4-HNE (ab46544) were purchased from Abcam Technology (Abcam, Cambridge, UK). Antibodies against FTH1 (sc-376594), FTL (sc-390558), and ubiquitin (sc-8017 AC) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against α-SMA (14395-1-AP), Ptgs2 (66351-1-Ig), BECN1 (11306-1-AP), p97/VCP (10736-1-AP), and SQSTM1/p62 (18420-1-AP) were purchased from Proteintech (Proteintech, IL, USA). Horseradish peroxidase (HRP)-conjugated AffiniPure goat anti-mouse IgG light chain (AS062), HRP-conjugated goat anti-mouse IgG heavy chain (AS064), and anti-NCOA4 (A5695) were purchased from ABclonal (ABclonal, Wuhan, China). Antibodies against S403-pp62 (#39786), LC3B (#83506), PCNA (#13110), and GAPDH (#5174) were purchased from Cell Signaling Technology (Cell Signaling Technology, Danvers, MA, USA). Monoclonal Anti-FLAG® M2 (F1804), Monoclonal Anti-HA (H9658), and anti-ACTB (A5441) were purchased from Sigma–Aldrich (Sigma–Aldrich, St. Louis, MO, USA).
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6

Comprehensive Immunohistochemical Analysis of Iron Metabolism and Neuroinflammation

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A polyclonal rabbit anti-hepcidin 25 (Abcam, ab30760), recognising a 2.8 kDa protein [53 (link)], monoclonal antibody (MAB) human anti-ferritin light chain (Abcam, ab69090), human anti-ferritin heavy chain (Abcam, ab65080), anti-DMT1 (Abcam, ab123085), anti-FPN (Abcam, ab85370), anti-CD42b (Abcam, ab104704), anti-rabbit polyclonal glycophorin (Abcam, ab196568), anti-GFAP (Abcam, ab48050), anti-CD68 (Sigma-Aldrich, AMAB98073), MAB anti-CD11b (Thermo Fisher, Waltham, MA, USA, mAbM1/70), GFAP (Abcam, ab48050), MAB anti-Iba1 (Thermo Fisher, MAB M1/70), polyclonal anti-Iba1 (Wako, Fujifilm, Tokyo, Japan, catalogue number 019-19741), MAB anti-IL-6 (Thermo Fisher, catalog number M620), MAB IL-1β (Thermo Fisher, ILB1-H67), MAB anti-β amyloid 42 (Covance, Princeton, NJ, USA, SIG 39320), anti-phospho-tau (AT8, Thermo Fisher, MN1020), SOD1 (Abcam, ab252426), S100β (Abcam, ab218514), RUNX1 (Sigma-Aldrich, HPA004176) and OLIG2 (Santa Cruz Biotechnology, Dallas, TX, USA, sc-365644) were used for IHC or Western blotting. The following secondary antibodies were used: biotinylated goat anti-rabbit-Ig and biotinylated horse anti-mouse (both from Vector Laboratories, 1:250 for IHC), Alexa Fluor 568-labelled donkey anti-mouse-Ig, Alexa Fluor 488-labelled donkey anti-rabbit-Ig and Alexa Fluor 568-labelled donkey anti-goat-Ig (all from Invitrogen, 1:1000 for immunofluoresence).
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7

Immunohistochemical Analysis of Mouse Organs

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Paraffin embedded mice eyes and spleens were sectioned, deparaffinized, and rehydrated. Antigen retrieval was performed in a solution with 3.38% citric acid and 24.4% sodium citrate. Sections were washed in PBI (1x PBS, 0.05% Igepal). The following primary antibodies were used: rabbit anti-mouse L-ferritin (1:100; ab69090 Abcam); rabbit anti-mouse H-ferritin (1:100; ab65080 and ab183781 Abcam); goat anti-mouse collagen IV (1:20; AB769, Merck Millipore); and rabbit anti-mouse albumin (1:2000; A001, DAKO, Glostrup, Denmark). All primary antibodies were diluted in 1x PBS, 0.5% bovine serum albumin, 0.05% Igepal with 10% of donkey serum (Sigma Aldrich), except anti-albumin antibody that was diluted in PBI. Negative controls were included by omitting the primary antibody in sequential tissue sections. Secondary antibodies donkey anti-goat Alexa 488 (1:1000; Life Technology, Carlsbad, Ca, USA) and goat anti-rabbit 568 (1:1000; Invitrogen, Carlsbad, CA, USA) were incubated for 2 hours. Samples were counterstained with Hoechst (Sigma-Aldrich), mounted in Fluoromount (Sigma-Aldrich) and analyzed in a SP5 laser scanning confocal microscope (Leica Microsystems GmbH).
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8

Immunohistochemical Analysis of Neurodegenerative Markers

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A polyclonal rabbit anti-hepcidin 25 (Abcam ab30760) recognising a 2.8 kDa protein (Raha-Chowdhury et al., 2015 (link)), human anti-ferritin light chain (Abcam ab69090), human anti-ferritin heavy chain (Abcam ab65080), Anti-FPN (Abcam ab85370), anti-GFAP (Abcam ab48050), anti-CD68 (Sigma–Aldrich, MAB98073), and monoclonal anti-Iba1 (Thermo Fisher Scientific, MAB M1/70), Polyclonal anti-Iba1(Wako cat number 019-19741), monoclonal anti-IL-6 (Thermo Fisher, cat number M620), monoclonal anti-IL-1β (Thermo Fisher Scientific, cat number ILB1-H67), Anti-β amyloid (Covance cat number SIG 39320), Anti-Phospho-Tau (AT8, Thermo Fisher Scientific, cat number MN1020), was used for IHC. The following secondary antibodies were used: biotinylated goat anti-rabbit-Ig and biotinylated horse anti-mouse (both from Vector Laboratories, 1:250 for IHC); Alexa Fluor 568-labeled donkey anti-mouse-Ig, Alexa Fluor 488-labeled donkey anti-rabbit-Ig, and Alexa Fluor 568-labeled donkey anti-goat-Ig (all from Invitrogen, 1:1,000 for immunofluorescence).
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9

Immunohistochemical Analysis of Iron Metabolism

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Three μm paraffin sections were stained on a Dako Autostainer Universal Staining System (Dako, Glostrup, Denmark). The sections were deparaffinized, and heat induced epitope retrieval (HIER) was performed by incubation in a buffer solution consisting of 10 mmol/L Tris-base and 0.5 mmol/L EGTA, pH 9. After blocking of endogenous peroxidase activity by incubation in 1.5% hydrogen peroxide, the sections were incubated for 60 min with primary antibodies against TfR1 (CD71) (10F11, 1+50, NovoCastra, Newcastle, United Kingdom), FTH (ab65080, 1+800, Abcam, Cambridge, United Kingdom), or FTL (ab69090, 1+1000, Abcam). The antigen-antibody complex was detected using EnVision (Dako). Visualization was performed using DAB (diaminobenzidine) as chromogen. Finally, sections were counterstained with Mayer’s hematoxylin, and coverslips were mounted with Aquatex. Paraffin sections from a TMA containing 28 normal tissues and 12 cancers were used as controls. Omitting primary antibodies served as negative controls as well as controls for non-specific staining related to the detection system.
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10

Comprehensive Antibody Panel for Oxidative Stress Analysis

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The following primary antibodies were used for immunoblot analysis and immunohistochemistry: mouse monoclonal anti–transferrin receptor antibody (13‐6800, Invitrogen), goat polyclonal anti–Lipocalin‐2/NGAL antibody (AF1857, R&D systems), rabbit monoclonal anti–β‐actin (ACTB) antibody (AC026, ABclonal), rabbit monoclonal anti–IRP1 antibody (ab126595, Abcam), rabbit polyclonal anti–IRP2 antibody (NB100‐1798, Novus), rabbit polyclonal anti–FTH1 antibody (3998, CST), rabbit polyclonal anti–ferritin light chain (FTL) antibody (ab69090, Abcam), rabbit polyclonal anti–divalent metal transporter 1 (DMT1) antibody (20507‐1‐AP, proteintech), rabbit polyclonal anti–8‐hydroxy‐2'‐deoxyguanosine (8‐OHdG) antibody (bs1278R, Bioss), rabbit polyclonal anti–4‐Hydroxynonenal antibody (bs6313R, Bioss), anti–CD10 antibody (ab256494, Abcam), anti–Ki67 antibody (ab16667, Abcam), rabbit monoclonal anti–Cleaved Caspase‐3 antibody (9664, CST), rabbit monoclonal anti–Glutathione Peroxidase 4 antibody (ab125066, Abcam), and anti–xCT antibody (NB300‐318, Novus). Secondary antibodies used in immunoblot analysis and immunohistochemistry were as follows: HRP‐conjugated polyclonal Goat anti–Rabbit antibody (P0448, DAKO), HRP‐conjugated polyclonal Rabbit anti–mouse antibody (P0260, DAKO) and HRP‐conjugated polyclonal Rabbit anti–Goat antibody (P0160, DAKO).
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