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10 protocols using rpmi 1640 cell culture medium

1

Regulation of calcium signaling in cells

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RPMI-1640 cell culture medium, penicillin/streptomycin and L-glutamine were purchased from Lonza (Walkerville, IL, USA). Fetal bovine serum (FBS) was ordered from Atlanta Biologicals (Norcross, GA, USA). MaR2 and MaR1 were purchased from Cayman Chemical (Ann Arbor, MI, USA), stored in an ethanol solution at −80 °C. The solution was diluted immediately before use in Krebs-Ringer bicarbonate buffer with HEPES (KRB-HEPES, 119 mM NaCl, 4.8 mM KCl, 1.0 mM CaCl2, 1.2 mM MgSO4, 1.2 mM KH2PO4, 25 mM NaHCO3, 10 mM HEPES, and 5.5 mM glucose (pH 7.40–7.45)) to the desired concentrations and added to the cells. UEA-1 was obtained from Sigma-Aldrich (St. Louis, MO, USA). Vasoactive intestinal peptide (VIP), U73122 and U73343 were purchased from Tocris Bioscience (Ellisville, MO, USA). Histamine, carbachol (CCh), 2APB, 1-butanol (1-but) and tert-butanol (t-but) were obtained from Sigma-Aldrich (St. Louis, MO, USA). Fura-2/AM was purchased from Life Technologies (Grand Island, NY, USA). n-BOC-Phe-Leu-Phe-Leu-Phe (BOC2) was ordered from GenScript (Piscatawy, NJ, USA). BLT1 inhibitor U-75302 and LTB4 were ordered from Cayman Chemical (Ann Arbor, MI, USA). Lipoxin A4, H89, thapsigargin and RO-317549 were ordered from EMD Millipore (Billerica, MA, USA).
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2

Inducible Expression of LMP1 in HK1 Cells

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HK1 (a gift from George Tsao, Hong Kong University) and HK1 cells expressing inducible GFP-LMP1, pQCXP GFP-LMP1 CTAR1 and pQCXP LMP1 CTAR2 have been previously described [49 (link),91 ]. To induce LMP1 expression in the HK1 GFP-LMP1 cells, we added doxycycline to a final concentration of 1 μg/μL. The cell lines were grown in RPMI-1640 cell culture medium (Lonza; 12-702Q) with corresponding supplements added. The cells were maintained at 37°C with 5% CO2. The media was supplemented with a 10% final concentration of fetal bovine serum (FBS; Seradigm; 1400–500), 2 mM L-glutamine (Corning; 25-005-Cl), 100 IU penicillin-streptomycin (Corning; 30-002-CI), and 100 μg/mL:0.25 μg/mL antibiotic/antimycotic (Corning; 30-004-CI). MCF10A cells were maintained in Dulbecco’s modified Eagle’s medium along with equivalent supplements as specified by ATCC (Lonza; MEGM kit; CC-3150) and Cholera toxin to a final concentration of 100 ng/mL.
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3

Rat Cytokine Receptor Expression Analysis

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Rat IL4, IL5 and IL13 were from NCI BRB Preclinical Repository (Frederick, MD). Histamine was purchased from Sigma (St. Louis, MO, USA). Fura-2/AM was from Invitrogen (Carlsbad, CA, USA). The 35 mm glass bottom culture dishes were from MatTek Corporation (Ashland, MA, USA). RPMI 1640 cell culture medium, penicillin/streptomycin, and L-glutamine were purchased from Lonza (Walkerville, IL, USA). FBS was from Atlanta Biologicals (Norcross, GA). Alamar Blue was from Thermo Fisher (Waltham, MA, USA).
Primers for rat cytokine receptors were from SABioscience-Qiagen (Frederick, MD, USA). All reagents for reverse transcription polymerase chain reaction (RT-PCR) were from Biotools B&M Labs S.A. (Madrid, Spain), except Blue Juice™ Gel Loading Buffer 10× (Invitrogen, Inchinnan, UK).
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4

Resolvin D1 Modulation of Cellular Responses

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RPMI-1640 cell culture medium, penicillin/streptomycin, and L-glutamine were purchased from Lonza (Walkerville, IL, USA). Fetal bovine serum (FBS) was from Atlanta Biologicals (Norcross, GA, USA). Fura-2/AM and Amplex Red were from ThermoFisher (Waltham, MA, USA). Inhibitors and suppliers are listed in the Table.
Resolvin D1 (7S,8R,17S-trihydroxy-4Z,9E,11E,13Z,15E,19Z-docosahexaenoic acid, RvD1) was from Cayman Chemical (Ann Arbor, MI, USA). RvD1 dissolved in ethanol as supplied by the manufacturer was stored at −80°C with minimal exposure to light. Immediately before use, RvD1 was diluted with either RPMI or Krebs-Ringer bicarbonate buffer with HEPES (KRB-HEPES, 119 mM NaCl, 4.8 mM KCl, 1.0 mM CaCl2, 1.2 mM MgSO4, 1.2 mM KH2PO4, 25 mM NaHCO3, 10 mM HEPES, and 5.5 mM glucose [pH 7.45]) to the desired concentration (10−8 M) and added to the cells.
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5

Formulation and Characterization of PLGA-Based Nanocarriers

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PLGA Resomer RG 503 H, poly(D,L-lactide-co-glycolide), 50:50, Mw 24,000–38,000 was acquired from Evonik, Essen, Germany. SPC 90G (soy phosphatidylcholine, Phospholipon 90G), DDAB (dimethyldioctadecylammonium (bromide salt), and DSPE-PEG 2000 (N-(carbonyl-methoxypolyethylenglycol-2000)-1,2-distearoyl-sn-glycero-3-phosphoethanolamine 2000) were purchased from Lipoid, Ludwigshafen, Germany. Ursolic acid was purchased from Wuxi Cima, China. Thiazolyl Blue Tetrazolium Bromide, 4’,6-diamidino −2-phenylindole dihydrochloride (DAPI) and Nile Red were purchased from Merck, Darmstadt, Germany. RPMI-1640 cell culture medium was purchased from Lonza, Verviers, Belgium, Fetal bovine serum, GlutaMAX (L-alanyl-L-glutamine dipeptide in 0.85% NaCl), and 100× antibiotic-antimycotic were purchased from Life Technologies (Gibco/Life Technologies, Warszawa, Poland). Dimethylsulfoxide (DMSO) was purchased from ChemPur, Piekary Slaskie, Poland. Uranyl acetate and copper mesh (400 Mesh) with formware filters and carbon shells were purchased from Agar Scientific, Essex, UK.
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6

Dissolution and Characterization of Compounds

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Lansoprazole was purchased by Sigma-Aldrich (Milan, Italy) and was dissolved at 20 mM in DMSO in absence of direct light and reconstituted immediately prior its use. Efavirenz was purified from commercially available Sustiva (Bristol-Myers Squibb) as described [3 (link)], dissolved in DMSO and added to the culture medium in the indicated concentrations and times. RPMI-1640 cell culture medium (BE12-702F), antibiotics (DE17-603E), phosphate buffer saline (PBS) (BE17-512F), trypsin/EDTA (BE17-171E) and fetal bovine serum (DE14-701F) were obtained from Lonza (Milan, Italy). Trypan blue was bought from Alexis Biochemicals (Florence, Italy) and Annexin V-FITC Apoptosis detection kit from Enzo Life Sciences (Lausen, Switzerland). 4-Nitrophenyl phosphate disodium salt hexahydrate tablets for proliferation assay was from Sigma-Aldrich.
The pH of all cell culture supernatants were estimated by the use of a pH 123 Microprocessor pH Meter (Hanna Instruments, Italy).
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7

Metastatic Melanoma Spheroid Formation

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Human metastatic melanoma Me30966 (supplied by Istituto Nazionale per lo Studio e la Cura dei Tumori, Milan, Italy) was maintained in RPMI-1640 medium supplemented with 10% fetal calf serum and antibiotics, at 37°C in humidified 5% CO2. Experiments were performed in buffered (B), unbuffered (UNB) and pH6.5 RPMI-1640 cell culture medium (Lonza). The cell line was negative for mycoplasma contamination, as routinely tested by modified nested polymerase chain reaction (VenorGeM Kit, Minerva Biolabs, Germany).
To allow spheroid formation, 15 × 103 Me30966 cells were cultured in 96-well plate (Costar Ultra Low Attachment, Sigma.Aldrich) in complete cell culture medium until 72 hours at 37°C and 5% CO2 in continuous rotation.
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8

Culturing HEK293 and HK1 Cells for Transfection

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HEK293 cells (ATTC CLR-1573) were grown in Dulbecco modified Eagle medium (DMEM) (catalog number 12-604Q; Lonza). The medium was supplemented with a 10% final concentration of fetal bovine serum (FBS) (catalog number 1400-500; Seradigm), 2 mM l-glutamine (catalog number 25-005-Cl; Corning), 100 IU penicillin-streptomycin (catalog number 30-002-CI; Corning), and 100 μg/ml antibiotic–0.25 μg/ml antimycotic (catalog number 30-004-CI; Corning). HK1 cells were grown in RPMI 1640 cell culture medium (catalog number 12-702Q; Lonza) with the corresponding supplements added. The cells were maintained at 37°C with 5% CO2. HEK293 cells were transfected with plasmids using Lipofectamine 3000 transfection reagent (catalog number L3000015; Invitrogen) according to the manufacturer’s instructions.
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9

AnxA1 Modulation of Conjunctival Goblet Cells

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AnxA1 was obtained from MyBiosource (San Diego, CA). The compound was stored at -20°C. Prior to use, AnxA1 was immediately diluted in Krebs-Ringer bicarbonate buffer with HEPES (KRB-HEPES, 119 mM NaCl, 4.8 mM KCl, 1.0 mM CaCl2, 1.2 mM MgSO4, 1.2 mM KH2PO4, 25 mM NaHCO3, 10 mM HEPES, and 5.5 mM glucose [pH 7.45]) to the required concentration and added to the conjunctival goblet cells. RPMI-1640 cell culture medium, penicillin/streptomycin, trypsin, and L-glutamine were purchased from Lonza (Walkerville, IL). Fetal bovine serum (FBS) was from Atlanta Biologicals (Norcross, GA). Fura-2 was from Life Technologies (Grand Island, NY). U73122 and U73343, KN92 and KN93 were purchased from Tocris Bioscience (Ellisville, MO). The lectin Ulex Europaeus Agglutinin (UEA-1), histamine, BAPTA/AM, 2-aminoethyl diphenylborinate (2-APB), 1-butanol (1-but), t-butanol (t-but), carbachol, aristolochic acid (AA), thapsigargin and RO317549 were all purchased from Sigma-Aldrich (St Louis, MO). UO126 was obtained from R&D Systems (Minneapolis, MN). H89 and synthetic lipoxin A4 (LXA4, 5(S),6(R),15(S)-TriHETE) were from EMD Millipore (Billerica, MA). Resolvin (Rv) D1 (7S, 8R, 17S-trihydroxy-4Z, 9E 11E, 13Z, 19Z-docosahexaenoic acid) was purchased from Cayman Chemical, Ann Arbor, MI). N-Boc-Phe-Leu-Phe-Leu-Phe (BOC2) was obtained from Genscript Corp in Piscataway, NJ.
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10

Resolvin-mediated Regulation of Cellular Signaling

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RPMI-1640 cell culture medium, penicillin/streptomycin and L-glutamine were purchased from Lonza (Walkerville, IL). Fetal bovine serum (FBS) was from Atlanta Biologicals (Norcross, GA). UEA-1 and histamine were obtained from Sigma–Aldrich (St. Louis, MO).
RvE1 and RvD1 were purchased from Cayman Chemical (Ann Arbor, MI) or obtained from the Serhan lab. RvE1 or RvD1, in ethanol, was stored at −80 °C, and diluted immediately before use in either RPMI medium or Krebs-Ringer bicarbonate buffer with HEPES (KRB-HEPES, 119 mM NaCl, 4.8 mM KCl, 1.0 mM CaCl2, 1.2 mM MgSO4, 1.2 mM KH2PO4, 25 mM NaHCO3, 10 mM HEPES, and 5.5 mM glucose (pH 7.40–7.45)) to the desired concentrations (10−8 M for RvD1 and 10−9 M for RvE1) and added to the cells.
Ro-318220, U73122 and U73343, KN92 and KN93 were purchased from Tocris Bioscience (Ellisville, MO). histamine, carbachol (CCh), aristolochic acid (aris acid), BAPTA, 2-APB, 1-butanol (1-but) and t-butanol (t-but) were from Sigma-Aldrich (St Louis, MO). Fura-2/AM and BAPTA/AM were from Life Technologies (Grand Island, NY). Amplex Red was from Invitrogen (Grand Island, NY).
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