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Hematoxylin and eosin

Manufactured by Muto Pure Chemicals
Sourced in Japan

Hematoxylin and eosin (H&E) is a widely used staining technique in histology and pathology laboratories. Hematoxylin, a natural dye, stains nuclei blue, while eosin, a synthetic dye, stains the cytoplasm and other structures pink or red. This combination of stains provides a clear contrast that allows for the visualization and identification of various cellular and tissue components under a microscope.

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20 protocols using hematoxylin and eosin

1

Thymic Medullary Size Quantification

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Paraformaldehyde-fixed and frozen sections were stained with hematoxylin and eosin (Muto Pure Chemicals Co.) and observed under an Eclipse E1000 microscope (Nikon). The size (mm2) of medullary regions in the thymic sections was measured by using ImageJ software.
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2

Intestinal Tissue Fixation and Staining

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Intestinal tissues were fixed in 4% paraformaldehyde (Nacalai tesque, Kyoto, Japan) in PBS overnight at 4 °C and embedded in paraffin (Sakura FinTek, Torrance, CA, USA). After deparaffinization, tissue sections were stained with hematoxylin and eosin (Muto Pure Chemicals, Tokyo, Japan).
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3

Lung Histological Analysis Post-Methacholine

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After the methacholine challenge, the lung was resected from mice that were euthanized with high dose pentobarbital (200 mg/kg). Lung tissues were fixed in 10% buffered formalin for 24 h at room temperature and then embedded in paraffin. Serial sections (3 μm‐thick) were cut and stained with hematoxylin and eosin (Muto Pure Chemicals Co., Tokyo, Japan).
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4

Ear Tissue Analysis Protocol

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For hematoxylin and eosin staining, ear specimens were fixed with 4% paraformaldehyde/PBS solution, embedded in paraffin, cut into 5 μm-thick sections, and stained with hematoxylin and eosin (Muto pure chemicals). For immunohistochemical staining, ear sections were treated with microwaves, followed by incubation with methanol containing 0.3% H2O2, avidin/biotin blocking kit (Vector laboratories, catalog#: SP-2001), and normal serum (Vector laboratories). Ear sections were then incubated with the following antibodies at 4 °C for 18 h: rat anti-Ly6G antibody (1 μg/mL; clone: 1A8, catalog#: 127602; BioLegend), rat IgG2a isotype control antibody (1 μg/mL; clone: RTK2758, catalog#: 400502; BioLegend), rabbit polyclonal anti-RIPK1 antibody (2.5 μg/mL, catalog#: NBP1-77077, Novus Biologicals), and rabbit polyclonal IgG isotype control antibody (2.5 μg/mL, catalog#: ab37415, Abcam). They were incubated subsequently with biotinylated secondary antibody, ABC reagent (Vector laboratories), 3´-diaminobenzidene tetrahydrochloride solution (Nacalai tesque), and counterstained with hematoxylin. TUNEL staining was conducted by using TACS 2 TdT-DAB In Situ Apoptosis Detection Kit (R&D systems, catalog#: 4810-30-K), according to manufacturer’s protocols.
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5

Establishment of Primary Sebocyte Cultures

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Primary sebocyte cultures were obtained from occipital hair follicle sebaceous glands. From the hair follicles, the sebaceous glands were dissected under a binocular microscope and transferred to a tissue culture dish. The cells were maintained in Dulbecco's modified Eagle medium (DMEM; Hyclone Laboratories, Logan, UT, USA) at 37℃ in a humidified atmosphere of 5% CO2. Explants were incubated for three days, and the medium was then changed to Epilife (MEPI500CA; Gibco BRL, Grand Island, NY, USA). The medium was changed every three days. DMEM was supplemented with penicillin (100 U/ml), streptomycin (100 µg/ml), and 20% heat inactivated bovine serum (Hyclone Laboratories), while Epilife was supplemented with penicillin (100 U/ml), streptomycin (100 µg/ml), and fungizone (250 µg/ml).
Once the cells became subconfluent, they were harvested using 0.25% trypsin and 10 mM ethylenediamine tetraacetic acid (EDTA) in Hank's balanced salt solution, followed by subculturing at a split ratio of 1:3. Cells obtained after the second passage were used in this study. These cultured sebocytes were subjected to hematoxylin and eosin (Muto Pure Chemicals Co., Tokyo, Japan) and Oil Red O (Sigma, St. Louis, MO, USA) staining, and immunocytofluorescence against cytokeratin 1 and 7 (Chemicon, Billerica, MA, USA) before experimental use (Fig. 1).
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6

Cryosectioning and Histological Staining

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The fixed tissues were immersed in 20% sucrose solution overnight for cryoprotection, embedded in O.C.T. compound (Sakura Finetek Japan, Tokyo, Japan), and then frozen on an aluminum block that was submerged in liquid nitrogen in advance. The sliced heart sections (5-μm thickness) of PND 7 and PND 21 mice were stained with hematoxylin and eosin (Muto Pure Chemicals, Tokyo, Japan) and Masson trichrome (Muto Pure Chemicals).
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7

Toc-HDO-antimiR #7 Biodistribution and Toxicity

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Mice were intravenously administered Toc-HDO-antimiR #7 at 5 mg/kg, 15 mg/kg, or 50 mg/kg. Blood samples were collected for serum biochemical analysis at 7 days after injection. Kidneys and livers were removed for histological analysis at 7 days after injection of Toc-HDO-antimiR #7 at 50 mg/kg. Kidney and liver tissues were fixed by transcardiac perfusion with 4% paraformaldehyde, and immersed in 4% paraformaldehyde overnight. The tissues were embedded in paraffin, and then were cut into 5-μm sections by using a microtome (ROM-308; Yamato Kohki Industrial Co, Tokyo, Japan). The sections were stained with hematoxylin and eosin (Muto Pure Chemicals).
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8

Achilles Tendon Histomorphometry in Mice

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After removing the skin, various tendons were macroscopically observed in mice of three genotypes. Hind limbs including Achilles tendon were embedded intact in paraffin after fixation with 4% paraformaldehyde phosphate buffer solution (PBS) for 48 h and decalcification in 18.5% EDT-X (Falma, Tokyo, Japan) for 3 weeks. Tissue sections were sectioned (4.5 μm) in the sagittal or transverse plane. The sections were stained with Hematoxylin and Eosin (MUTO PURE CHEMICALS, Tokyo, Japan), Safranin-O (MUTO PURE CHEMICALS, Tokyo, Japan)/Fast green (Sigma-Aldrich, United States), and Picro-Sirius Red stain kit (ScyTek labolatories inc.). We also measured the transverse-section area of the center of Achilles tendon. Analysis of the transverse section area was carried out using ImageJ software.
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9

Immunofluorescent Staining of Thymus Tissue

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Thymus tissues were fixed with 4% (g/vol) paraformaldehyde (PFA) and embedded in OCT optimum cutting temperature compound (Sakura Finetek). Frozen thymuses were sliced into 10-μm-thick sections and stained with antibodies specific for β5t (Murata et al., 2007 (link); MBL), Aire (Invitrogen, clone 5H12), and LC3B (Cell Signaling Technology, clone D11), followed by AlexaFluor-conjugated anti-IgG antibodies (Invitrogen). Sections were also stained for the reactivity with UEA1 (Vector Laboratories). For the staining with antibodies specific for CD4 (Invitrogen, clone RM4–5) and CD8α (Invitrogen, clone 53–6.7) in addition to the staining for the reactivity with UEA1, thymus tissues were embedded, sliced, and fixed with acetone. Images were visualized and analyzed with a TCS SP8 (Leica) or an ECLIPSE Ti2 (Nikon) confocal laser scanning microscope.
For the measurement of the area of thymic regions, frozen thymuses were sliced into 10-μm-thick sections, fixed with neutral buffered formalin, stained with hematoxylin and eosin (Muto Pure Chemicals), and imaged under an Eclipse E1000 microscope (Nikon). The areas of the cortical and medullary regions in the thymic sections were measured by using Photoshop software (Adobe).
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10

Immunofluorescent Staining of Thymus Tissue

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Thymus tissues were fixed with 4% (g/vol) paraformaldehyde (PFA) and embedded in OCT optimum cutting temperature compound (Sakura Finetek). Frozen thymuses were sliced into 10-μm-thick sections and stained with antibodies specific for β5t (Murata et al., 2007 (link); MBL), Aire (Invitrogen, clone 5H12), and LC3B (Cell Signaling Technology, clone D11), followed by AlexaFluor-conjugated anti-IgG antibodies (Invitrogen). Sections were also stained for the reactivity with UEA1 (Vector Laboratories). For the staining with antibodies specific for CD4 (Invitrogen, clone RM4–5) and CD8α (Invitrogen, clone 53–6.7) in addition to the staining for the reactivity with UEA1, thymus tissues were embedded, sliced, and fixed with acetone. Images were visualized and analyzed with a TCS SP8 (Leica) or an ECLIPSE Ti2 (Nikon) confocal laser scanning microscope.
For the measurement of the area of thymic regions, frozen thymuses were sliced into 10-μm-thick sections, fixed with neutral buffered formalin, stained with hematoxylin and eosin (Muto Pure Chemicals), and imaged under an Eclipse E1000 microscope (Nikon). The areas of the cortical and medullary regions in the thymic sections were measured by using Photoshop software (Adobe).
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