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19 protocols using anti twist1

1

Antibody Characterization for EMT Research

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The following antibodies were used: rabbit polyclonal anti-Slug (1:1000), anti-Twist1 (1:500), anti-ZEB1 and anti-ZEB2 (1:500, Santa Cruz Biotechnology, Santa Cruz, CA). Rabbit monoclonal anti-E-cadherin (1:1000, Santa Cruz). Rabbit polyclonal anti-MDM2 (C-18) (1:500, Santa Cruz). Mouse monoclonal anti-α-tubulin (1:2000) and anti-fibronectin (1:1000) (Cell Signaling, Danvers, MA). Mouse monoclonal anti-N-cadherin (1:500), anti-ZO-1 (1:1000) and anti-vimentin (1:1000) (Abcam, Cambridge, UK). Mouse monoclonal anti-Restin (1:500), anti-His (1:1500) and anti-Flag (1:2000) (Sigma). Mouse monoclonal anti-p73 (1:1000), anti-p53 (1:1000) and anti-p63 (1:1000) (Abcam). Horseradish peroxidase–conjugated secondary antibodies were obtained from Amersham Biosciences.
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2

Immunohistochemical Evaluation of MTDH Expression

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Immunohistochemical staining of MTDH was performed following standard protocols. Briefly, paraffin-embedded tissue blocks were cut into 4-µm thick sections. The tissue sections were incubated with anti-MTDH antibodies (Cat#40-6500, Invitrogen, Carlsbad, CA, USA; dilution 1:400) overnight at 4°C, incubated in EnvisionTM+Kits (Dako, Glostrup, Denmark), and visualized using 0.01% 3, 3-diaminobenzidine. The staining patterns were scored as follows: low expression: 0–50% of tumor cells with positive staining; high expression: more than 50% of tumor cells with positive staining. The intensity of staining of islet cells was used as an internal positive control. The score of immunohistochemical staining was evaluated independently by three investigators. Immunofluorescence staining was carried out as described previously [26 (link)]. The following primary antibodies are used in this study: anti-MTDH (Invitrogen; 1:50), anti-E-cadherin (Cat#610182, BD Biosciences, Franklin Lakes, NJ, USA; 1:50), anti-Twist1 (Cat#sc-81417, Santa Cruz, Dallas, TX, USA; 1:50), anti-GFP (Cat#ab13970, Abcam, Cambridge, UK; 1:250).
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3

TIM-3 Regulation and Epithelial-Mesenchymal Transition in HCC

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The human HCC SMMC-7721 cell line was obtained from the American Type Culture Collection (Manassas, VA, USA). Cell culture medium Dulbecco's modified Eagle's medium (DMEM), fetal bovine serum (FBS) and 0.02% EDTA-trypsin digestion were all obtained from Gibco (Thermo Fisher Scientific, Inc., Waltham, MA, USA). The primary antibodies anti-TIM-3 and anti-β-actin supplied by OriGene Technologies, Inc. (Rockville, MD, USA); TIM-3 siRNA (human; h), TIM-3 lentiviral activation particles (h), primary antibodies anti-E-cadherin, anti-N-cadherin, anti-MMP-9, anti-Twist 1, anti-Slug, anti-Snail and anti-Smad were all purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA). anti-β-actin antibody was obtained from OriGene Technologies, Inc. All primers were designed by the PrimerBank (http://pga.mgh.harvard.edu/primerbank/) and synthesized by Shanghai GenePharma Co., Ltd. (Shanghai, China). Quantitative polymerase chain reaction (qPCR) reagents were supplied by Thermo Fisher Scientific, Inc. All others reagents, mainly including Chemiluminescence Western Blotting kit, crystal violet dye, QuantiPro™ BCA Assay Kit and SYBR-Green, were purchased from Sigma-Aldrich (Merck KGaA, Darmstadt, Germany).
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4

Western Blot Analysis of EMT Markers

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Cells were lysed with Radio Immunoprecipitation Assay lysis buffer (Beyotime, Shanghai, China). Proteins were separated by 10% sodium dodecyl sulphate-polyacrylamide gel electrophoresis and electro-transferred onto polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA). After blocking with 5% nonfat dry milk, the membranes were incubated with primary antibodies (anti-Twist1, anti-E-cadherin, anti-vimentin, and anti-GAPDH; purchased from Santa Cruz Biotechnology, Santa Cruz, CA, USA) overnight at 4°C. Then, the membranes were washed and incubated with the corresponding secondary antibodies (Bosis, Beijing, China) for 1 h at 37°C. Protein bands were visualized using an ECL western blotting kit (Pierce Biotechnology, Waltham, MA, USA).
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5

Immunohistochemical Analysis of Tissue Proteins

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Immunohistochemical analyses were performed on LNAT, LT and LP tissue samples fixed with formaldehyde 10% or Hope I/II reactive Method (Innovative Diagnostik-System, Germany), and subsequently using 1–2 micrograms of specific antibodies anti-MEOX2, anti-TWIST1, anti-HDAC9, and anti-EVX1 (Santa Cruz Biotechnology, Dallas, Texas, USA), by incubation in a humidity chamber and in addition of the antigen-specific reaction with avidin-biotin peroxidase/diamino-benzidine system (Dako, Carpinteria, CA, USA). A Ventana System device (Roche, Tucson, Arizona, USA) and a transmitted light microscopy study (Leica, Bannockburn, IL, USA), were used to obtain photomicrographs at 40X and 80X magnification.
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6

Twist1 and Sp1 Western Blot Protocol

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GC cells were lysed with Pierce RIPA buffer (Thermo Scientific; #89900). Proteins were separated on SDS-polyacrylamide gels and then transferred to polyvinylidene fluoride (PVDF) membranes, followed by incubation with antibodies dissolved in Tris-buffered saline (TBS) containing 2% skim milk and 10% Tween 20. The primary antibodies used in this study were mouse monoclonal anti-Twist1 (1:100, Santa Cruz Bio-technology; #sc-81417), rabbit polyclonal anti-Sp1 (1:200, Active Motif; #39058), and mouse monoclonal anti-α-tubulin (1:200, Santa Cruz; #sc-8035) antibodies. The secondary antibodies were alkaline phosphatase-conjugated anti-rabbit IgG (1:3000, Bio-Rad Laboratories; #1706518) and anti-mouse IgG (1:3000, Bio-Rad Laboratories; #1706520). Blots were developed with ImmunoStar AP Substrate (Bio-Rad Laboratories; #1705018).
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7

Western Blot Analysis of EMT Markers

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Protein samples were denatured in sample buffer and subjected to 12% SDS–polyacrylamide gel as previously described [39 (link), 48 (link)]. Protein was transferred to PVDF membranes and the blots were developed using enhanced chemiluminescence (NEN Life Sciences, Waltham, MA) and imaged using Kodak 20000MM Image Station.
Antibodies were diluted as follows: anti-CBX7 (1:1000, no. 21873, Abcam, Cambridge, MA), anti-TWIST-1 (1:200, no. 81417; Santa Cruz Biotechnology, CA), anti-Slug (1:1000, no. 9585; Cell Signaling Technology, Danvers, MA), anti-FOXC2 (1:1000, no. 12974; Cell Signaling Technology, Danvers, MA), anti-β-actin (1:10000, KM9001; Sungene Biotech, Tianjin, China) and anti-GAPDH (1:1000, Sigma-Aldrich, Cell Signaling Technology, Danvers, MA).
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8

Twist1 and Tcf4 Immunoprecipitation

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Cultured DPCs were lysed with RIPA buffer (Beyotime, Shanghai, China), the protein concentration was measured with BCA, and a small part of the lysate was prepared as input. The rest of the lysate was incubated with immunoglobulin G (IgG; negative control), anti-Twist1 (Santa Cruz, CA, United States), or anti-Tcf4 (Proteintech, Shanghai, China) overnight. Then protein A/G agarose was added to couple to the antibody. Finally, the immunoprecipitate was eluted and analyzed by Western blot.
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9

Chromatin Immunoprecipitation and qPCR

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Soluble chromatin was precipitated with anti-MUC1-C, anti-STAT3, anti-TWIST1 or a control non-immune IgG (Santa Cruz Biotechnology). The precipitates were analyzed by qPCR using the Power SYBR Green PCR Master Mix and the ABI Prism 7300 sequence detector (Applied Biosystems). Data are reported as fold enrichment relative to the IgG control (19 (link)). Primers used for ChIP qPCR are listed in Supplemental Table S2.
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10

Epithelial-Mesenchymal Transition Protein Assay

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The antibodies used were mouse anti-E-cad IgG2a (BD Biosciences; San Jose, CA, USA), mouse anti-N-cad IgG1 and anti-TWIST1 (Santa Cruz Biotechnology; Santa Cruz, CA, USA), mouse anti-vimentin IgG1, rabbit anti-FN IgG and anti-GAPDH (Sigma-Aldrich), horseradish peroxidase (HRP)-labeled goat anti-mouse IgG, and HRP-labeled goat anti-rabbit IgG (Beyotime Institute of Biotechnology; Haimen, China). TGF-β was used, with 2 ng/mL as the final concentration (BD Bioscience). Other reagents were from Sigma-Aldrich unless described otherwise.
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