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14 protocols using biotinylated goat anti rabbit igg

1

Immunohistochemical Analysis of Angiogenic Factors

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Postfixed cryostat sections in acetone (at 4°C for 5 minutes) were used. For vascular endothelial growth factor (VEGF) and matrix MMP 9, CAT, and SOD, the following primary antibodies were used: rabbit polyclonal anti-SOD-1 (Abcam), rabbit polyclonal anti-CAT (Abcam), mouse monoclonal anti-VEGF (Abcam), and goat polyclonal anti-MMP 9 (Santa Cruz Biotechnology, Santa Cruz, California, USA). The binding of the primary antibodies was demonstrated using the HRP/DAB UltraVision Detection System, as described previously (6,7). For secondary antibodies, biotinylated goat anti-rabbit IgG, biotinylated goat anti-mouse IgG, or donkey anti-goat IgG (Thermo Fisher Scientific) (10 minutes) were employed. Cryostat sections in which the primary antibodies were omitted from the incubation media, served as negative controls. The sections for VEGF and MMP9 were counterstained with Mayer's hematoxylin. After the staining procedure, the samples were immediately examined using an Orthoplan Leitz light microscope, equipped with a Leica DC 500 digital camera.
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2

Immunofluorescence Analysis of T and B Cells

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Sample preparation and immunofluorescence analysis was described earlier (Vaeth et al., 2014 (link)). The following primary antibodies were used: rat anti-Foxp3, rat anti-B220 (both eBioscience), polyclonal rabbit anti-CD3 (Dako), chicken anti-C3/C3a (Abcam), and/or biotinylated PNA (Vector Laboratories). Anti-CD3 and anti-Foxp3 antibodies were amplified using biotinylated goat anti-rabbit IgG (Thermo Scientific) or biotinylated goat anti-rat IgG (Molecular Probes). Images were captured using a laser-scanning confocal microscope (Leica TCS SP5 II equipment) and analyzed using ImageJ (NIH). A list of antibodies and detailed procedures with dilutions of antibodies and staining of HEp-2 cells can be found in the Supplemental Experimental Procedures.
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3

Immunofluorescence Localization of NF-κB and IRF3

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H292 cells were fixed in 4% paraformadehyde for 20 min and permeabilized with 0.5% Triton X-100 for 15 min, washed three times with PBS, then incubated with 10% skim milk in PBS for 15 min to block non-specific antibody binding. To detect the cellular location of NF-κB p65 or IRF3, cells were incubated with antibodies against NF-κB p65 or IRF3 (1:500 in PBS) at 4°C overnight, then with the secondary antibody biotinylated goat anti-rabbit IgG (1:500 in PBS, Thermo Fisher Scientific) at room temperature for 90 min, then Alexa Fluor 568 streptavidin (1:500 in PBS, Thermo Fisher Scientific) for another 90 min at room temperature. Nuclear counterstaining involved staining with 4′,6-diami-dino-2-phenylindole (DAPI) for 10 min at room temperature. Fluorescence signals were observed by fluorescence microscopy (ZEISS, Observer A1, Oberkochen, Germany). Anti-HPeV VP0 antibody was used to detect HPeV1-infected H292 cells (33 (link)).
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4

Serotonergic Neuron Immunostaining in Fly Brains

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Fly brains were immunostained with rabbit anti-5HT polyclonal antibody (1:200, S5545, Sigma-Aldrich) at 25°C for 24 h. After three washes in PBS-T, the samples were incubated in biotinylated goat anti-rabbit IgG (1:200, 31,822, Thermo Fisher Scientific) at 25°C for 1 day. The brain samples were then washed and incubated in Alexa Fluor 635 streptavidin (1:500, S32364, Thermo Fisher Scientific) at 25°C for 1 day. After three-time extensive washing, the brain samples were cleared and mounted in FocusClear (FC-101, CelExplorer). Brain images were obtained using a Zeiss LSM 700 confocal microscope under the same confocal settings for each brain sample, and the images were further analyzed using ImageJ. Single optical sections were used to calculate the average intensity values per voxel of the 5HT immunopositive signals in the soma and fibers of DPM neurons, and the signals were normalized to the GFP intensity.
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5

Immunohistochemical Analysis of Cardiac Tissue

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Immunohistologic analysis of cardiac tissues was performed using 7-mm slices adjacent to the short-axis slices used for autoradiographic analysis. Immunohistochemical staining was performed using standard techniques. Briefly, tissue sections were fixed (10-min acetone) and blocked with 10% bovine serum albumin. The sections were then incubated overnight with either rabbit anti-CD68 (Abcam) or rabbit anti-CD3 (Abcam) antibodies. Biotinylated goat antirabbit IgG (Thermo Fisher Scientific) was used as a secondary antibody. Optical microscopy images were obtained using a Keyence BZ-9000 microscope (Keyence Corp.). To quantify the percentage of an area having CD68-positive myocardial areas, ROIs were set on the anterior, lateral, inferior, and septal left ventricular wall as well as right ventricular wall (Fig. 1D). The percentage of CD68-positive areas within each ROI was determined by computer-aided image analysis (Image J software, version 1.47v; National Institutes of Health) using an intensity threshold that matched the visually identified CD68-positive staining area as closely as possible. Then, the correlation between the histologically CD68-positive areas and the intensity of 14 C-methionine uptake was analyzed.
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6

Vimentin Expression Profiling by ICC

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Expression of vimentin was assessed by immunocytochemical analysis. P2 cells were grown on 2 Â 2 cm 2 slides in six-well plates at a density of 1 Â 10 5 cells/well. At confluency, the cells were fixed at room temperature with 4% paraformaldehyde, washed three times in PBS, and permeabilized with 2% Triton X-100 in PBS. Nonspecific antibody binding was blocked with 3% normal goat serum in PBS. After rinsing, the cell layers were incubated for 2 h at 37˚C with a primary anti-vimentin antibody (1:250, ab92547; Abcam), followed by 30 min of incubation at room temperature with biotinylated goat anti-rabbit IgG (31460; Thermo; Waltham, MA). Antibody binding was visualized by the DAB solution. Nuclei were counterstained with hematoxylin as described in the section above.
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7

Microglial Activation Profiling in Brain

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For bright field microscopy, immunohistochemistry assays were performed on every eighth section from the brains to identify the microglial activation using microglia markers (Iba-1 and TSPO). All washing and incubation procedures were performed using 0.1 M PBS unless stated otherwise. The sections were washed three times and treated with 1% H2O2 before being incubated for 2 h in the blocking solution (2% goat serum) to block the non-specific antigen-binding sites. They were then incubated in the primary rabbit-anti-Iba1 antibody (1:500, Wako, # 019-19741) and rabbit anti TSPO (1:500, Merck, #ABC139) solutions for 2 days at 4°C and, subsequently, in the secondary antibody (1:200, biotinylated goat anti-rabbit IgG; Life Technologies, #656140) for 2 h. The sections were washed three times and ABC solution (1:250, Vector Laboratories, # PK-6100) was applied for 2 h. The sections were then incubated in the developer solution containing 0.4 mg/ml DAB and 0.0006% hydrogen peroxide until an optimal color developed. Then, the sections were washed, mounted, dehydrated, coverslipped, and their images were captured with a Zeiss microscope (MBF Bioscience).
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8

Microglial Activation Identification in Brains

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For bright field microscopy, immunohistochemistry assays were performed on every 6th section of the brains to identify microglial activation using microglia markers (Iba-1 and TSPO). All washing and incubation procedures were performed using 0.1 M PBS unless stated otherwise. The sections were washed 3 times and treated with 1% H2O2 before being incubated for 2 hrs in the blocking solution (2% goat serum) to block non-specific antigen binding sites. Then they were incubated in the primary rabbit-anti-Iba1 antibody (1:500, Wako, # 019-19741) and rabbit-anti-TSPO (1:500, Merck, #ABC139) solutions for two days at 4 °C and subsequently in the secondary antibody (1:200, biotinylated goat anti-rabbit IgG; Life Technologies, #656140) for 2 hrs. The sections were washed 3 times and ABC solution (1:250, Vector Laboratories, # PK-6100) was applied for 2 hrs. Sections were then incubated in the developer solution containing 0.4 mg/ml DAB and 0.0006% hydrogen peroxide until an optimal color developed. In the end, the sections were washed, mounted, dehydrated, coverslipped and images were captured with a Zeiss microscope (MBF Bioscience).
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9

Immunohistochemistry for Carotid Artery Calcification

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For immunohistochemistry, mice carotid artery paraffin-embedded sections, with endogenous peroxide activity blocked with 0.3% H2O2, and nonspecific antibody binding blocked using 5% normal goat serum, were incubated with primary antibodies for 18 h at 4°C (16 (link)). We used primary rabbit antibody to CHOP (Santa Cruz Biotechnology, Santa Cruz, CA), and rabbit antibody to PARPp85 (Promega, Fitchburg, WI). Secondary antibody (biotinylated goat anti-rabbit IgG, Invitrogen, Carlsbad, CA) treatment for 30 minutes at 22°C, was followed by 30 min treatment using Histostain Plus kit (Invitrogen). Washed sections were incubated with 3,3’-diaminobenzidine (DAB) substrate for 2-5 min, and counterstained with hematoxylin. Images were captured using an Olympus BX51 microscopic DP71 Digital Camera System. Calcification in situ was assessed via von Kossa staining kit (NovaUltra, IHC World, Woodstock, MA). Section area was measured using NIH Image J software.
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10

ELISA for Crude OV Adult ES Antigen

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Plates were washed 5 times with PBST, and 100 μL of a protein A purified rabbit IgG (10 μg/mL) against crude OV adult ES antigen extract was added to each well and incubated at 37°C for 2 hours. After washing three times, 1:4,000 diluted biotinylated-goat anti rabbit IgG (Invitrogen, CA, USA) in PBST was added and incubated at 37°C for 1 hour. Thereafter, the plates were washed 3 times with PBST, and 100 μL/well of streptavidin horseradish peroxidase (HRP) conjugate (Zymed, CA, USA) was added diluted 1:10,000 in PBST. After incubation for 30 min, the plates were washed 3X with PBST, and the substrate solution Orthophenylenediamine hydrochloride (Sigma, St. Louis, MO, USA) was added to wells and incubated for 20 min in the dark at room temperature. The reaction was stopped by the addition of 2M sulfuric acid (H2SO4), and the plates were read on an absorbance reader (Tecan, Austria) at the optical density (OD) at 492 nm.
Two well-trained laboratory personnel were responsible for execution of the sample analysis of both tested samples (index cases) and reference standard tests and they were analyzed simultaneously. During the sample execution, the sample IDs were blinded and the laboratory staffs had no knowledge of the sample subjects.
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