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8 protocols using blimp1

1

Immunoblotting Assay for NLRP12 Pathway

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Rabbit anti-mouse NLRP12, Blimp-1, IκBα and p-IκBα antibody were acquired from Santa Cruz Biotechnology (Cambridge, MA, USA); Rabbit anti-mouse caspase-1 antibody were from BioVision (CA, USA) and mouse anti-mouse β-actin antibody were from Abbkine (Redlands, CA, USA). Lipopolysaccharide (LPS) and ATP were purchased from Sigma-Aldrich (St. Louis, MO, USA). The caspase-1 specific inhibitor Z-YVAD-FMK was from BioVision (CA, USA). ELISA kits for mouse interleukin 1β and TNF-α were from MultiSciences (Hangzhou, China) and Fast Protein Precipitation and Concentration Kit were from Aidlab Biotechnology (Beijing, China). Electrophoretic Mobility Shift Assay Kit was from Viagene Biotech (Changzhou, China). Reagents and apparatus used in western blot were obtained from Bio-Rad (Hercules, CA, USA); The Goat anti-rabbit or mouse secondary antibody were from Abbkine (Redlands, CA, USA).
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2

Maintenance and Genetic Manipulation of HEK293 Cells

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Human embryonic kidney (HEK) 293 cells were maintained in DMEM (Invitrogen). The media was supplemented with 10% FBS, 100 U/ml penicillin, 200 µg/ml streptomycin, and 0.25 µg/ml amphotericin B. Polyclonal antibodies against the epitope tags (Flag, HA, and Myc), Ubiquitin, BLIMP1, and β-actin were obtained from Santa Cruz Biotechnology, Inc. Anti-Hrd1 and anti-Tubulin were purchased from Sigma-Aldrich. Fluorescence-labeled antibodies, including CD11c, CD11b, CD4, CD8, CD45.1, CD45.2, MHC-I, MHC-II, CD80, and CD86, were used for flow cytometry analysis (eBioscience). Hrd1 and the Ubiquitin expression plasmids were obtained as reported previously (Gao et al., 2008 (link)). Flag-BLIPM1 expression plasmids were purchased from Addgene. The truncation mutants of both Hrd1 and BLIMP1 were generated by PCR and subcloned into pCMV-Flag (Sigma-Aldrich) or pCMV-Myc vectors (Invitrogen).
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3

Immunoprecipitation and Western Blot Analysis

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Transient transfection was performed using Lipofectamine 2000 (Invitrogen), according to the manufacturer’s instructions, in 60-mm dishes and using 2–3 µg of total DNA per transfection. 2 d after transfection, cells were lysed in 1× Nonidet P-40 lysis buffer and freshly added protease inhibitor cocktail. The cell lysates were mixed with antibodies (1 µg) for 2 h, followed by the addition of 30 µl of fast flow protein G–Sepharose beads (GE Healthcare) for an additional 2 h at 4°C. Immunoprecipitates were washed four times with Nonidet P-40 lysis buffer and boiled in 20 µl of 2× Laemmli’s buffer. Samples were subjected to 8–12% SDS-PAGE analysis and electro-transferred onto polyvinylidene difluoride membranes (Millipore). Membranes were probed with the indicated primary antibodies against Hrd1 (Sigma-Aldrich), BLIMP1 (Santa Cruz Biotechnology, Inc.), and Tubulin (Santa Cruz Biotechnology, Inc.), followed by horseradish peroxidase–conjugated secondary antibodies. Membranes were then washed and visualized with an enhanced chemiluminescence detection system (ECL; GE Healthcare). When necessary, membranes were stripped by incubation in stripping buffer (Bio-Rad Laboratories), washed, and then reprobed with other antibodies as indicated.
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4

Blimp1 and Actin Antibody Protocol

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The procedure was performed as described previously (Leavenworth et al., 2015 (link)). The following
antibodies were used: Blimp1 (Santa Cruz, sc-66015) and Actin (Sigma,
A-3584).
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5

Molecular Analysis of Activated B Cells

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For qPCR, mRNA was isolated from B cells, ABCs, ASCs, 10 μg/ml LPS-stimulated wild-type and Rel−/− B cells following 24, 36, 38, 60 and 72 hours of culture and BCL1 cells following stimulation with IL-2 (20 ng/ml) and IL-5 (20 ng/ml), using the Zymo Research kit. 1 μg mRNA was used to prepare cDNA using Oligo (dT) and quantitation was performed using the SSO syber green. Expression was normalized using ubiquitin C as a housekeeping gene. The primers used in this study are specified in Table S3.
For Immunoblot analysis, whole-cell lysates were prepared using RIPA lysis buffer. The resulting lysates were run on either 10% SDS-PAGE gels or 5–14% Criterion Tris-HCl Gel (Bio-Rad). The following antibodies were used to identify the protein of interest: Rela, cRel, Blimp1, IRF4, Bach2 and actin (all from Santa Cruz Biotechnology). The resulting proteins were detected using the Bio-Rad ChemiDoc XRS System and SuperSignal West Femto Substrate Maximum Sensitivity Substrate (Thermo Scientific) to detect chemiluminescence released by HRP-labeled secondary antibodies.
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6

Blimp1 and Actin Antibody Protocol

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The procedure was performed as described previously (Leavenworth et al., 2015 (link)). The following
antibodies were used: Blimp1 (Santa Cruz, sc-66015) and Actin (Sigma,
A-3584).
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7

SDS-PAGE and Immunoblotting of B-cell Lysates

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B-cell lysates were prepared for sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), followed by immunoblotting as previously described.51 (link) Antibodies for AID, BLIMP-1, and β-Actin were purchased from Santa Cruz Biotechnology (Dallas, TX, USA).
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8

Immunofluorescence Staining of Stem Cell Markers

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The cells were fixed in 4% paraformaldehyde for 20 min and then incubated in the blocking buffer (PBS containing 5% BSA and 0.2% Triton X-100) for 2 h. After washing three times with PBS, the cells were incubated overnight at 4 °C under the corresponding antibody. Then, after washing with PBS, cells were incubated with the secondary antibody at 37 °C for 1 h. Finally, the cells were photographed with a Leica DMI8 microscope. The antibodies used are Tfcp2l1(AF5726, 1:100, R&D systems), Stella (ab19878, 1:100, Abcam), Tfap2c (sc-12762, 1:100, Santa Cruz), and Blimp1 (sc-47732, 1:100, Santa Cruz).
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