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15 protocols using 70 230 mesh

1

Spectroscopic Characterization of Compounds

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All melting points were determined on a Büchi apparatus and are uncorrected. 1H NMR, 13C-NMR, HSQC and HMBC spectra were recorded on an Avance 400 instrument (Bruker Biospin Version 002 with SGU). Chemical shifts are reported in ppm, using the solvent as internal standard. Extracts were dried over Na2SO4, and the solvents were removed under reduced pressure. Merck F-254 commercial plates were used for analytical TLC to follow the course of the reactions. Silica gel 60 (Merck 70–230 mesh) was used for column chromatography. Microanalyses were performed with a Perkin-Elmer 260 elemental analyzer for C, H, and N, and the results were within ± 0.4% of the theoretical values unless otherwise stated. Reagents and starting material were commercially available.
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2

Synthesis and Characterization of K20E Compound

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Example 3

Methyl caffeate (762 mg) was dissolved in a mixture of 20 mL of benzene and 30 mL of acetone. After that, silver oxide (1.82 g) was added into above reaction mixture and further stirred under RT for 60 h. The filtrate of the mixture was purified to yield an intermediate compound (341 mg) by silica gel column chromatography (Silica gel 60, Merck 70-230 mesh) eluting with EtOAc/heptane (1:1) (Pieters et al., 1999). The intermediate was further acetylated to generate the final product, K20E, which was purified by silica gel column chromatography eluting with ethyl acetate/heptane (1:1). The molecular formula of K20E compound was established as C26H24O11 ([M+H]+m/z 513.4708); 1H-NMR (CDCl3 300 MHz) δ: 2.27 (6H, s, OAc), 2.30 (3H, s, OAc), 3.78 (3H, s, OMe), 3.83 (3H, s, OMe), 4.28 (1H, d, J=7.4 Hz, H-3), 6.19 (1H, d, J=7.4 Hz, H-2), 6.29 (1H, d, J=15.8 Hz, H-2″), 7.17 (1H, d, J=8.4 Hz, H-5′), 7.19 (1H, s, H-6), 7.21 (1H, d, J=1.9 Hz, H-2′), 7.28 (1H, dd, J=8.4, 1.9 Hz, H-6′), 7.42 (1H, s, H-4), 7.59 (1H, d, J=15.8 Hz, H-1″); IR (KBr) νmax: 3074, 3016, 1776 (Ar—OCOCH3), 1739, 1716 (—COOMe), 1643 ( ), 1612, 1492 (aromatic), 1273, 1203 and 1176 cm-1.

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3

Synthesis and Characterization of 4-((3-Benzylureido)methyl)furan-3-carbonyl Azide

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NMR spectra were recorded on Varian Mercury Plus 400 MHz spectrometer at 400 MHz for 1H NMR and 100 MHz for 13C NMR. 13C and 1H NMR spectra were taken using acetone-d6 (for 4-((3-benzylureido)methyl)furan-3-carbonyl azide) (3) and DMSO-d6 (for DHFP) as a solvent. Infrared spectra were recorded on Perkin Elmer FTIR/FIR Spectrophotometer Frontier. All high-resolution mass spectra (HRMS) were measured on UPLC-UHR-Q/TOFABSCIEX Triple TOF 4600. Uncorrected melting points were determined on the Electrothermal melting point analyzer.
4-(isocyanatomethyl)furan-3-carbonyl azide was used as starting material and was synthesized according to the Yılmaz et al. procedure [23 (link)]. The chemicals used in the experiments were obtained from commercial sources. All reactions were monitored by TLC (Thin Layer Chromatography) with Merck 0.2 mm silica gel 60 F254 aluminum plates, and silica gel (Merck 70-230 mesh) was used in column chromatography.
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4

Analytical Protocols for Chemical Characterization

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All chemical reagents and solvents were obtained from Sigma Aldrich, Merck, Alfa Aesar, Fluka or TCI and were used without further purification. Microwave-assisted reactions were performed using the Biotage Initiator microwave synthesizer. TLC were performed on precoated silica plated (Merck silica gel 60, F254) and visualized with UV or stained with phosphomolybdic acid, alkaline potassium permanganate stain. Flash chromatography was performed on silica (Merck, 70-230 mesh). 1H, 13C and 31P NMR spectra were measured on a Bruker AMX 300, 500 or 400 spectrometer (Supporting Information). Chemical shifts were reported in parts per million (δ) relative to the tetramethylsilane standard. Mass spectra were performed on a Finnigan/MAT LCQ mass spectrometer under either electron spray ionization (ESI) or electron impact (EI) techniques.
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5

Synthesis and Characterization of Organic Compounds

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Reagents were purchased
from Aldrich and TCI Chemicals and were of analytical grade. Reactions
were monitored by thin-layer chromatography (TLC) carried out on silica
gel plates (Macherey Nagel SIL G UV254) and visualized in UV light.
Purification of the compounds was performed by filtration or by column
chromatography. Column chromatography was carried out on silica gel
(Merck, 70–230 mesh) using the appropriate solvents. PE refers
to petroleum ether 40–60 °C. 1H and 13C NMR spectra were recorded on a Bruker 400 MHz Avance spectrometer.
13C NMR spectra are fully proton-decoupled. Electrospray ionization
(ESI) mass spectral analyses were performed on a mass spectrometer
MSQ Surveyor, Finnigan, using direct sample injection in the positive
or negative mode. High-resolution mass spectrometry (HRMS) spectra
were registered using a 4800 MALDI-TOF mass spectrometer (Applied
Biosystems, Foster City) in the positive reflection mode in the m/z range of 100–700. All synthesized
compounds gave satisfactory NMR spectra. All tested compounds possessed
purity > 95% based on HRMS. Data were processed using Compass Data
Analysis software and MestReNova v.14.1.1.
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6

Chemical Characterization of Organic Compounds

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All chemical reagents were purchased from Merck, Fluke, or Sigma-Aldrich and used without previous purification. All solvents were distilled and stored over proper desiccants. Melting points were measured on a BUCHI M-565 equipment (BÜCHI Labortechnik GmbH, Essen, Germany) being EtOAc the last solvent used in all cases. NMR spectra were recorded at 298 K on a Varian Mercury 400 NMR spectrometer (Varian, Palo Alto, CA, USA) at 400 MHz and 101 MHz for 1H and 13C respectively. All spectra were referenced using the TMS signal or the residual peak of the solvent. Chemical shifts (δ) are reported in ppm and coupling constants (J) are given in Hz. A TripleToF 6600-1 mass spectrometer (Sciex, MA, USA) was used for high-resolution mass spectrometry (HRMS). Silica gel (Merck 70–230 mesh) was used for column chromatography (CC) and silica gel plates HF254 for thin-layer chromatography (TLC). TLC spots were detected by heating after staining with cerium molybdate in H2SO4.
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7

Lipid Extraction and Profiling of Sabellaria alveolata

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Lipids were extracted from three S. alveolata whole individuals following Folch et al.51 (link). The lipids were placed at the top of a silica gel microcolumn (30 × 5 mm internal diameter; Kieselgel; 70–230 mesh [Merck, Lyon, France]; previously heated to 450 °C and deactivated with 5% water). Neutral lipids were eluted with 10 mL of chloroform/methanol (98:2, v/v), and polar lipids were eluted with 15 mL of methanol52 . Tricosanoic acid (2.3 μg) was added as internal standard. Polar lipids were transesterified at 100 °C for 10 min with 1 mL of boron trifluoride (12% Me–OH)53 . This transesterification produces fatty acid methyl esters (FAME) from the fatty acid esterified at the sn-1 and sn-2 position of diacylphospholipids, and the sn-2 position of plasmalogen PL. It also produces dimethyl acetals (DMA) from the alkenyl chains at the sn-1 position of plasmalogens54 (link). FAME and DMA were analysed in a HP6890 GC system (Hewlett-Packard) equipped with a DB-Wax capillary column (30 m × 0.25 mm; 0.25 μm film thickness; Agilent technologies). Peaks were analysed by comparison of their retention time with those of a standard 37 component fatty acid methyl ether (FAME) mix and other standard mixes from marine bivalves. Fatty acid contents were expressed as the mole percentage of the total fatty acid content. Total DMA was used as an indicator of the plasmalogen level.
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8

Purification of Growth Inhibitory Compounds from C. lepifera Fronds

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C. lepifera fronds (1.5 kg dry weight) were extracted with 15 L of 70% (v/v) aqueous methanol and 15 L of methanol as described above, and concentrated at 40 °C in vacuo to produce an aqueous residue. The aqueous residue was then adjusted to pH 7.0 with 1 M phosphate buffer, partitioned three times against an equal volume of ethyl acetate, and separated into ethyl acetate and aqueous fractions. The biological activity of the two fractions was determined using a garden cress bioassay as described above.
The ethyl acetate fraction was then evaporated to dryness and separated on a column of silica gel (100 g, silica gel 60, 70–230 mesh; Merck), and eluted with 20%, 30%, 40%, 50%, 60%, 70%, and 80% ethyl acetate in n-hexane (v/v; 100 mL per step), ethyl acetate (100 mL), and methanol (200 mL). The biological activity of all separated fractions was determined using a garden cress bioassay. Two growth inhibitory active fractions were obtained by elution with 70% (fraction 6) and 80% (fraction 7) ethyl acetate in n-hexane.
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9

Purification and Analysis of Compounds

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Column chromatography was performed on silica gel-60 (70–230 Mesh, by Merck). Thin-layer chromatography (TLC) was done on precoated Kieselgel-60 GF254 aluminum (Al) sheets made by Merck. The ceric sulphate (CeSO4) solution was sprayed for the visualization of spots and then subjected to heating, while a high-performance liquid chromatography (HPLC) device (Shimadzu SHP-600), coupled to a photodiode array detector 20-A, was employed for confirming the sample's purity of all the isolated compounds. The HPLC analysis was carried out under isocratic conditions using a C8 column (4.6mm × 150mm) packed with 5 μm diameter particles; the mobile phase was acetonitrile : water (95 : 5, v/v) containing 1.0% acetic acid with the flow rate = 1 ml/min and the run time was set for 50 minutes. Detections were made at 365 nm [8 (link)].
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10

Analytical techniques for organic compounds

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Solvent evaporation was carried out using a Buchi Rotavapor (R215, Buchi, Flawil, Switzerland). Column chromatography (CC) was performed via glass column using silica gel (70-230 mesh, Merck, Darmstadt, Germany), and thin layer chromatography (TLC) was performed using silica gel pre-coated plates F-254 Merck (20 × 20 cm). Compounds were visualized under UV light (254 and 365 nm), sprayed with dilute sulfuric acid and heated. The melting points of the compounds were recorded using Buchi M-560 (Buchi, Flawil, Switzerland) melting point apparatus equipped with a Buchi M-569 sample loader. The 1H NMR (500 MHz) and 13C NMR (125 MHz) data were recorded via a Bruker Avance AV-500 (Bruker, Ettlingen, Germany) spectrometer in deuterated solvents, with trimethylsilane (TMS) used as the reference. Chemical shifts were given in ppm (δ), and coupling constants (J) in Hz. ESI-TOF-MS spectra were registered on a QTOF Spectrometer (Bruker, Ettlingen, Germany). A Multiskan Go microplate reader (Thermo Fischer Scientific, Waltham, MA, USA) was used to measure absorbances in the bioassays.
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