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14 protocols using vectastain elite abc universal plus kit

1

SARS-CoV-2 Detection in Fixed Tissues

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To identify SARS-CoV-2 in fixed tissue samples, SARS Nucloecapsid Protein Antibody (Rabbit polyclonal, Novus Biologicals) was used. Deparaffinized sections were autoclaved for 15 min in Target Retrieval Solution (S1700; Dako) for antigen retrieval. Endogenous peroxidases were blocked using 3% hydrogen peroxidase in methanol for 30 min and non-specific antibody binding was blocked using Serum-free protein block (X0909; Dako). Samples were incubated at 4°C for 12 hr in a solution containing the primary antibodies, followed by a 10 min wash with PBS. The secondary biotinylated antibody (Vectastain Universal Elite ABC PLUS kit, PK-8200; Vector Laboratories) was incubated in avidin-biotin-peroxidase complex (Vectastain Universal Elite ABC PLUS kit, PK-8200; Vector Laboratories). The peroxidase reaction was performed using diaminobenzidine (DAB, ImmPACT DAB, SK-4105; Vector Laboratories).
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2

Formalin-Fixed Paraffin-Embedded Tissue Staining

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Mouse tissues or tumors were fixed in 10% neutral-buffered formalin for 24 hours, and then transferred to 70% ethanol, embedded in paraffin and sectioned at 4–5 μm. H&E staining was performed by the Biospecimen Procurement & Translational Pathology Shared Resource Facility (BPTP SRF) of the University of Kentucky Markey Cancer Center, and stained slides were scanned with an Epson scanner. IHC staining was performed with the VECTASTAIN® Elite® ABC Universal PLUS Kit (PK-8200) from Vector Laboratories, following the manufacturer’s instructions. Staining was visualized with brown DAB substrate and the counterstain was Harris’s hematoxylin.
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3

Histopathological Analysis of Tissue Specimens

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For histopathological analysis, tissue specimens were instantly fixed in 10% buffered formalin for 72 h and stored in 75% ethanol. The tissues were embedded in paraffin and 5 µm sections were cut and stained with hematoxylin and eosin as well as probed with requisite antibodies as described previously [26 (link)]. Briefly, tissue slides were baked overnight at 65 °C. Next day, tissues were deparaffinized, hydrated and antigens were recovered by boiling in citrate buffer (pH 6, 0.05% Tween 20). Tissue sections were blocked with 2.5 % horse serum and incubated with indicated primary antibody (Ki67, cleaved caspase-3, TUNEL, etc.) overnight at 4 °C. Tissues were washed and incubated with HRP-conjugated or fluorescence-labeled secondary antibody. Subsequently, tissues slides were washed and developed using VECTASTAIN Elite ABC Universal PLUS kit (Vector Laboratories, Burlingame, CA) for colorimetric detection and counterstained with hematoxylin or DAPI. Tissues were dehydrated, dried, and mounted with Cytoseal 60 (Thermo Scientific, Waltham, MA) and quantified and evaluated by Definiens Tissue Studio 64 [Dual] 4.1 with corresponding modules (Definiens, Inc., Cambridge, MA), ZEN 3.0 blue edition (Oberkochen, Germany) or ImageJ.
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4

UBAP2L Localization in ALS Spinal Cord

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Human spinal cord paraffin sections from clinically and histopathologically characterized ALS patients and neurologically healthy individuals were obtained from the Sheffield Brain Tissue Bank. Consent was obtained from all subjects for autopsy, histopathological assessment, and research in accordance with local and national Ethics Committee–approved donation. Three control cases, three sALS, and three ALS-C9 cases were included in the study. Human spinal cord sections were 7 µm thick. Rehydrated sections were subjected to microwave antigen retrieval in sodium citrate buffer. After incubation with the primary anti-UBAP2L antibody overnight at 4°C, secondary HRP-conjugated anti-rabbit IgG antibody (Vector Laboratories) was applied for 1.5 h at RT. Vectastain Elite ABC Universal Plus Kit (Vector Laboratories) and DAB (Sigma-Aldrich) were used for detection. Images were taken with a 20× objective (UPLFLN 20×Ph/0.5) of a BX53 microscope equipped with DP73 camera and processed using cellSens Standard 1.9 software (all Olympus).
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5

Immunohistochemical Analysis of Tumor Tissues

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Tumor-bearing mice were sacrificed at day 30 (1 day after the last administration) after treatment. Tumor tissues and draining lymph nodes were fixed in 4% paraformaldehyde in PBS for 24 h, embedded in paraffin blocks, and sectioned (5 μm). Slides were stained with anti-mouse primary antibodies. Signals were developed using the Vectastain Elite ABC Universal plus kit, peroxidase (Vector Laboratories, Cat: PK-8200) or fluorescently labeled secondary antibodies. Cell nuclei were labeled with hematoxylin or DAPI. An Olympus IX81 fluorescence microscope was used to photograph representative peroxidase staining samples or fluorescence samples. The antibodies used for immunohistochemistry and immunofluorescence are presented in Supplementary Table 3.
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6

Immunohistochemical and Immunofluorescence Analyses

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Tumor tissues were fixed in 4% paraformaldehyde in PBS for 24 h, embedded in paraffin blocks, and sectioned (5 μm). Slides were then stained with anti-rabbit primary antibodies. Signals were developed using the Vectastain Elite ABC Universal Plus kit, peroxidase (Vector Laboratories, Cat: PK-8200), or fluorescently labelled secondary antibodies. Cell nuclei were labeled with hematoxylin or DAPI. An Olympus IX81 fluorescence microscope was used to photograph representative peroxidase staining or fluorescence samples. The antibodies used for the immunohistochemistry and immunofluorescence assays are listed in Table S4.
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7

Immunohistochemical Characterization of Tumor Samples

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The studies were conducted in accordance with recognized ethical
guidelines, utilized retrospective tissue samples, and were approved by an
institutional review board. The tissue microarray includes a wide range of
patient ages, tumor grades, and are composed of ER positive, HER2 positive, and
triple negative cases. It is composed of 46 tumors cases from 2002 to 2019
including primary tumors and nodal and distant metastases. Targeted genomic data
are available for these tumors. Clinical information and results are reported in
Supplementary Table
1
. SMARCA4 was performed on a Roche Ventana Benchmark Ultra
instrument (Tucson, AZ) using CC1 retrieval and antibody dilution at 1:25.
SMARCA2 (1:300), BRD7(1:400) and PB1 (1:2000) were performed manually using
Tris-EDTA antigen retrieval (pH 9). ARID2 (1:250) was performed manually using
citrate antigen retrieval (pH 6). Phospho-RPS6 was performed with VECTASTAIN
Elite ABC Universal PLUS kit (Vector Laboratories Inc) using citrate antigen
retrieval (pH 6). Sub-cellular localizations were identified by comparison with
H&E staining from the same samples.
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8

Immunohistochemical Profiling of MAPK8IP2 in Prostate Cancer

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Tissue microarray slides containing 140 prostate cancer and benign prostate tissue sections were gifts from Dr. Jiaoti Huang (Duke University, Durham, NC, USA). After deparaffinization and hydration, tissue slides were treated with 3% H2O2 for 15 min and then blocked with 5% bovine serum albumin (BSA) in Tris-buffered solution with Tween-20 (TBS-T) for 60 min at room temperature. The primary antibody for MAPK8IP2 was purchased from Sigma-Aldrich (catalog #HPA034780) and used at 1:40 dilution in 5% BSA/TBS-T overnight at 4°C with agitation. Visualization of the immunosignals was performed using the VECTASTAIN® Elite® ABC Universal PLUS kit (Vector Laboratories, Inc., Burlingame, CA, USA). The immunosignal index was calculated by multiplying the immune density (weak = 1, moderate = 2, and strong = 3) with the percentage positivity, as described in our recent publication.36 (link)
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9

Immunohistochemical Staining of Kidney Sections

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Human kidney ADPKD, ARPKD, and NHK sections were stained using the VectaStain Elite ABC Universal Plus kit (Vector Laboratories, PK-8200). Antibodies are in Supplemental Methods.
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10

Immunohistochemical Analysis of VEGFR2 Expression

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From each tissue microarray block, 4‐μm sections were deparaffinized and rehydrated. The sections were then incubated with citric acid (pH 6.0) for 20 minutes at 100°C. The sections were stained with an anti‐VEGFR2 antibody (polyclonal, ab2349, 1:200; Abcam, RRID: AB_302998) at 4°C overnight. Mouse skin tissue was used as the positive control. The negative controls were treated with Tris‐buffered saline instead of primary antibodies. Following incubation with the secondary antibodies for 30 min at room temperature (approximately 25°C), the specimens were stained using the VECTASTAIN Elite ABC Universal PLUS Kit (Vector Laboratories, Inc.). All sections were counterstained with 100% hematoxylin for 30 seconds at room temperature (approximately 25°C). All immunohistochemistry results were assessed by an experienced pathologist. Immune cells staining (IC‐VEGFR2), including lymphocytes, macrophages, granulocytes, dendritic cells, plasma cells, and tumor cells staining (TC‐VEGFR2), was separately evaluated. IC‐VEGFR2 was defined as positive when any immune cells were stained with an anti‐VEGFR2 antibody in the tumor stroma or intratumor area. TC‐VEGFR2 was defined as positive when any tumor cells were stained with an anti‐VEGFR2 antibody in the specimen (Figure 1).
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