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16 protocols using kb r7943

1

Reagents for Cell Culture Experiments

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All reagents used were cell culture grade. Dulbecco’s modified Eagle’s medium (DMEM), Opti-MEM, Hanks’ balanced salt solution (HBSS), trypsin-EDTA, fetal bovine serum (FBS), penicillin, streptomycin, and dispase were obtained from Invitrogen (Carlsbad, CA). Bovine serum albumin (BSA) was from Equitech-Bio Inc. (Kerrville, TX). Thrombin, hirudin, KN-93, and Ro-32–0432 were from EMD Millipore (Burlington, MA). Ser-Phe-Leu-Leu-Arg-Asn-amide trifluoroacetate salt (SFLLRN), amino-oxyacetic acid (AAOA), L-methionine sulfoximine, EGTA, ryanodine, dantrolene, and wortmannin were obtained from Merck KGaA (Darmstadt, Germany). L-trans-2, 4-L-trans-Pyrrolidine-2,4-dicarboxylic acid (PDC), U73122, U0126, and KB-R7943 were from Tocris Bioscience (Bristol, UK). 1,2-Bis(2-aminophenoxy)ethane-N,N,N',N'-tetraacetic acid tetrakis(acetoxymethyl ester) (BAPTA AM) was obtained from Molecular Probes (Eugene, OR). D-Phenylalanyl-prolyl-arginyl Chloromethyl Ketone (PPACK) was from Enzo Life Sciences (New York, NY).
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2

Fluorescent Calcium Imaging Assay

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Nifedipine (NIF) and caffeine (caf) were obtained from Sigma-Aldrich. The RU-28318, thapsigargin (Tg) and the KB-R7943 were obtained from TOCRIS Bioscience (Bristol, UK). Fluo-4/AM and Fura-2/AM were obtained from Thermo Fisher Scientific (Waltham, MA, USA).
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3

Calcium Imaging with Pharmacological Inhibitors

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Muscles used for Ca2+ imaging were perfused constantly with KRB solution containing (mmol/L): NaCl, 120.35; KCl, 5.9; NaHCO3, 15.5; NaH2PO4, 1.2; MgCl2, 1.2; CaCl2, 2.5; and glucose, 11.5. KRB solution was bubbled with a mixture of 97% O2 – 3% CO2 and warmed to 37 ± 0.2°C. Drugs used to inhibit CaCC were 5-nitro-2-(3-phenylpropylamino)-benzoic acid [NPPB; purchased from Sigma; (Yang et al., 2008 (link))] and 2-[(5-Ethyl-1,6-dihydro-4-methyl-6-oxo-2-pyrimidinyl)thio]-N-[4-(4-methoxyphenyl)-2 thiazolyl]acetamide [T16Ainh-A01; purchased from Tocris Bioscience (Ellisville, MO, United States); (Namkung et al., 2011 (link))]. Drugs used to inhibit NCX were 2-[2-[4-(4-Nitrobenzyloxy) phenyl]ethyl] isothiourea mesylate [KB-R7943; purchased from Tocris Bioscience; (Watano et al., 1996 (link))] and 2-[[4-[(4-Nitrophenyl)methoxy]phenyl]methyl]-4-thiazolidinecarboxylic acid ethyl ester [SN-6; purchased from Tocris Bioscience; (Niu et al., 2007 (link))]. NPPB (100 mM), T16Ainh-A01 (50 mM), KB-R7943 (10 mM) and SN-6 (10 mM) were dissolved in dimethyl sulphoxide (DMSO). Final dilutions were made by adding stock solutions to extracellular solutions used for specific experiments. Final concentrations of DMSO were less than 0.1%.
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4

Pharmacological Evaluation of Ion Channel Modulators

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Drugs were made up in dimethyl sulphoxide (DMSO), ethanol, or water depending on solubility. Stock solutions were added to the drug delivery reservoirs containing Hanks solution to make up the final concentrations. Drugs used were as follows: KB‐R7943, Tocris (Bristol, UK); Mibefradil, Sigma (Wicklow, Ireland); Nifedipine, Bayer (Leverkusen, Germany); SEA0400 was synthesized by Taisyo Pharmaceutical Co., Ltd., Saitama, Japan. Mibefradil was water soluble, while SEA0400 and KB‐R7943 were dissolved in DMSO and diluted with Hanks solution to give a final DMSO concentration of 0.1% and 0.05%, respectively. Nifedipine was first dissolved in ethanol and diluted with Hanks solution to give a final ethanol concentration of 0.1%. Control experiments showed that these concentrations of vehicle had no significant effects on the responses measured in this study.
The cell under study was continuously superfused with Hanks solution by means of a close delivery system consisting of a pipette (tip diameter 200 μm) placed approximately 300 μm away. This could be switched, with a dead space time of around 5 sec, to a solution containing a drug. All experiments were carried out at 35–37°C.
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5

Preparation and Use of Pharmacological Compounds

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TTX and KB-R7943 were obtained from Tocris Biosciences (UK) and culture medium from PromoCell (Germany). All other chemicals and compounds were purchased from Sigma-Aldrich (France). KB-R7943 was dissolved in DMSO, veratridine in 0.1N HCl and the remaining compounds in distilled water with further dilutions made from stock solutions with PSS.
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6

Mitochondrial Ca2+ Homeostasis Assay

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KB-R7943 (2-[2-[4-(4-nitrobenzyloxy)phenyl]ethyl]isothiourea) mesylate and CGP-37157 (7-Chloro-5-(2-chlorophenyl)-1,5-dihydro-4,1-benzothiazepin-2(3H)-one) were purchased from Tocris. Fura-2/AM, Fura-FF pentapotassium salt, tetramethylrhodamine ethyl ester (TMRE), JC-1, propidium iodide, Hoechst 33342, pluronic F-127, as well as all cell culture reagents including 50× MEM amino acids, 100× MEM non-essential amino acids (NEAA), 100× sodium pyruvate and 200mM Lglutamine were purchased from Life Technologies. Cyclosporine A (CsA), ruthenium red (RR), ionomycin, and all other chemicals were obtained from Sigma. HeLa cells and AD293 cells (Stratagene) were maintained in high glucose DMEM (Life Technologies, #11995-065) supplemented with 10% fetal bovine serum (Life Technologies) in a humidified cell culture incubator.
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7

KB-R7943: Characterization of a Potent Molecule

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KB-R7943 is an isothiourea derivative, quaternary ammonium-containing molecule, with a molecular weight 372, logP 3,83, logD from 1,41 to 1,52 (for pH from 1,7 to 8,0), HLB 16,31 pKa 10 (data from Chemaxone) (Fig. 1).

KB-R7943 [(2-{4-[(4-nitrophenyl)methoxy]phenyl}ethyl)sulfanyl]methanimidamide.

Fig. 1
KB-R7943 was from Tocris Bioscience (Bristol, UK). STZ, citrate buffer, and amitriptyline were from Merck KGaA (Darmstadt, Germany), and OraPlus from Perrigo (Dublin, Ireland). The formalin test used a freshly prepared 0.5% formaldehyde solution in saline. amitriptyline (purity not less than 98%) was obtained from Merck (USA), аcetonitrile (ACN, HPLC grade) manufactured by ITW Group (USA), hexane was obtained from Cryochrom (Russia), formic acid produced by Sigma-Aldrich (USA), purified water was prepared in the laboratory with a Milli-Q system from Millipore (USA), ethylacetate (purity not less than 99,8%) produced by Vekton (Russia), reserpine (99%, HPLC grade) manufactured by “Sigma-Aldrich” (USA) was used as an internal standard.
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8

DRG Neuron Ca2+ Imaging with Inhibitors

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Ca2+ concentrations were assayed using the ratiometric intracellular
calcium indicator Fluo-4AM (Dojindo). DRG neurons cultured for 18 days were
loaded at room temperature for 30 min with 2 μM Fluo-4AM in Hank's balanced salt
solution (HBSS) containing the following (in mM): 140 NaCl, 3 KCl, 1
MgCl2, 1 CaCl2, and 10 HEPES, pH 7.3, along with 0.02%
Pluronic (Sigma). Neuronal cultures were illuminated with ordinary light to
reveal the neurons that were cultured with TNF-α and LPS overnight. After that,
we use saline or 1.4 μM KB-R7943(Tocris, UK) or 960 nM ORM-10103(Sigma, USA) to
incubate these neurons for 2 h. Neuronal cell bodies and neurites identified
from the visible light observation were selected for Ca2+ imaging.
Neurons were illuminated with 488 nm light using Laser confocal microscope
(OLYMPUS FV1000).
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9

Isolation of Cardiotoxins from Cobra Venom

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Cardiotoxins were isolated from Naja oxiana cobra venom as described earlier [40 (link),41 (link)]. Ryanodine and KB-R7943 were from Tocris Bioscience (Bristol, UK). Nifedipine, 2-aminoethoxydiphenyl borate, inorganic salts, and glucose were obtained from Merck KGaA (Darmstadt, Germany). All other reagents obtained from local suppliers were of analytical grade or higher purity.
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10

Visualizing Sodium and Calcium Dynamics in Chondrocytes

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Human OA chondrocytes or C28I2 cells were seeded on 8-well chamber (Thermo Fisher, 154461) and loaded with 5 µM CoroNa Green (Invitrogen, C36676) or Fluo-8 (Abcam, ab112129) in Hanks’ Balanced Salt Solution for 45 min at 37 °C in the presence or absence of 25 nM ProTx II or 1 µM PF-04856264 with or without 0.5 µM KB-R7943 (Tocris, 1244). CoroNa Green and Fluo-8 were excited at 488 nm and fluorescence images (525–530 nm) were acquired with 25x water-dipping objective on Zeiss 880 confocal microscope every 2 s during the experiment. Na+ and Ca2+ transients in chondrocytes were induced by 100 nM ATP in the presence or absence of 25 nM ProTx II or 1 µM PF-04856264. Fluorescence was expressed as the ratio of cytosolic fluorescence and initial intensity (F/F0).
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