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Toyopearl deae 650m

Manufactured by Tosoh
Sourced in Japan

TOYOPEARL DEAE-650M is an anion exchange chromatography resin. It is designed for the purification and separation of biomolecules such as proteins, enzymes, and antibodies. The resin is composed of TOYOPEARL polymer beads with diethylaminoethyl (DEAE) functional groups. It is intended for use in various preparative and analytical chromatographic applications.

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10 protocols using toyopearl deae 650m

1

Laccase Purification Optimized Protocol

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For laccase purification, the protocol described in [30 (link)] was modified. All procedures were performed at 4 °C. Culture filtrate (6400 mL) was 90% saturated with (NH4)2SO4, and the precipitate was separated by filtration (Whatman No. 1 filter paper), re-suspended in dH2O, and dialyzed against dH2O overnight. At the next stage, the preparation was stirred with DEAE-cellulose for 20 min, and the proteins were desorbed twice with 200 mM potassium phosphate buffer (KPB) pH 6.5. The resulting preparation was dialyzed against 5 mM KPB pH 6.5 and loaded on a column packed with 25 mL of DEAE-Toyopearl 650M (Tosoh, Tokyo, Japan) and equilibrated with 5 mM KPB pH 6.5. Proteins were eluted by 150 mL of 50 mM KPB pH 6.5. For further purification, fractions with laccase activity were dialyzed against 20 mM KPB pH 6.5 and subjected to FPLC size-exclusion chromatography on a Superdex 75 (26/60) column (GE Healthcare Life Sciences, Chicago, IL, USA) equilibrated with 20 mM KPB pH 6.5. Fractions with different laccase izoenzymes were transferred to 5 mM citrate-phosphate buffer pH 5.0 by dialysis and purified by an additional stage of ion-exchange chromatography on a DEAE-Toyopearl 650M column equilibrated with 5 mM citrate-phosphate buffer pH 5.0. Proteins were eluted by a linear gradient of 5–20 mM of the same buffer.
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2

Isolation and characterization of farnesol

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The P. minus leaves were obtained from plants growing in an experimental plot at the Institute of Systems Biology of Universiti Kebangsaan Malaysia (UKM). Trans, trans-farnesol (trans,trans-3,7,11-trimethyl-2,6,10-dodecatrien-1-ol) was obtained from Alfa Aesar (Ward Hill, MA). Cis, trans-farnesol was purchased from Tokyo Chemical Industry (TCI) (Tokyo, Japan). Cis, cis-farnesol was obtained from Echelon Bioscience, Inc. (Salt Lake City, UT). DEAE-Toyopearl 650M, SuperQ Toyopearl 650M, SP Toyopearl 650M and TSK-gel GS3000SW were purchased from Tosoh (Tokyo, Japan), whilst standard proteins for gel filtration were obtained from Bio-Rad (Hercules, CA). All other reagents were analytical-grade commercial products. Water-insoluble chemicals were dissolved in absolute dimethyl sulfoxide or acetone, and subsequent dilutions were conducted in water. The presence of dimethyl sulfoxide or acetone in the reaction mixture had no effect on the enzyme activity.
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3

Purification of Lc-ALT Enzyme

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The crude LcALT was dialysed against 25 mM citrate buffer pH 6.2 and applied to a DEAE-Toyopearl-650 M (Tosoh Bioscience) column (22 × 90 mm) equilibrated with the same buffer (0.7 mL/min of flow rate). The fractions containing enzymatic activity were pooled and ammonium sulfate was added to achieve a final concentration of 400 mM. Subsequently, the protein solution was loaded onto a Phenyl-Toyopearl-650 M (Tosoh Bioscience) column (22 × 90 mm) equilibrated with 25 mM citrate buffer pH 6.2, containing 400 mM ammonium sulfate. The column was eluted with a 350–150 mM ammonium sulfate gradient with flow rate of 0.7 mL/min. Fractions exhibiting enzymatic activity were pooled, dialysed, and analysed on 8% SDS-PAGE gel.
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4

Purification of Mutant uvsY Protein

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Solid (NH4)2SO4 was added to the soluble fraction of the cells to a final concentration of 30% saturation. Following the centrifugation at 20,000×g for 20 min, the supernatant was collected and adjusted to a final concentration of 80% saturation. Following the centrifugation, the pellet was collected and dissolved in 100 mL of buffer A (50 mM Tris-HCl (pH 8.0), 1 mM dithiothreitol (DTT)) and applied to the column packed with Toyopearl DEAE-650 M (Tosoh, Tokyo, Japan) equilibrated with buffer A. After washing with buffer A, the bound uvsY-Δhis was eluted with each 20 mL of buffer A containing 100, 200, and 300 mM NaCl. Each fraction (5 mL) was assessed for the presence of uvsY-Δhis by SDS-PAGE. The active fractions were collected, concentrated to 1 mL in 10 mM Tris-HCl (pH 8.0) by Amicon Ultra-15 MWCO 10 k (Merck Millipore, Burlington, MA), and stored in 10 mM Tris-HCl (pH 8.0), 20% v/v glycerol at −30 °C. The uvsY-Δhis concentration was determined by the method of Bradford using Protein Assay CBB Solution (Nacalai Tesque, Kyoto, Japan) with bovine serum albumin (Nacalai Tesque) as standard.
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5

Purification of Biomolecules Using Chromatography

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All chemicals used in this study were of the highest grade available and were obtained from Sinopharm Chemical Reagent (Nanjing, China). Toyopearl DEAE-650 M and butyl-Toyopearl 650 M were obtained from Tosoh (Osaka, Japan). Chitopearl BCW-2605 and Chitopearl BCW-2503 (chitosan beads) were purchased from Fujibo (Tokyo, Japan).
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6

Isolation and Characterization of Medicinal Plant Compounds

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Fresh roots of P. heterophylla were obtained from a P. heterophylla planting base in Zherong, Fujian, China. The fungal strains, F. oxysporum and C. gloeosporioides, were kindly provided by the Institute of Agricultural Bio-Resources Research, Fujian Academy of Agricultural Sciences, Fuzhou, China. Toyopearl DEAE-650M and Sephadex G50 Fine were purchased from TOSOH Co., Ltd. (Tokyo, Japan) and GE Healthcare (Gothenburg, Sweden), respectively. Trypsin and BAPNA were purchased from Shanghai Yuanye Bio-Technology Co., Ltd. (Shanghai, China). All other chemicals were of analytical grade and were purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China).
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7

Isolation and Fractionation of SCCs

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SCCs were released from purified cells walls by mild acid hydrolysis and fractionated on BioGel P150 equilibrated in 0.2 N sodium acetate, pH 3.7, 0.15 M NaCl. The fractions containing SCCs were combined and concentrated using an Amicon Ultra - 15 Centrifugal Filter (KUltracel -3K). The retentate was desalted by repeated cycles of dilution with water and centrifugation. The concentrated SCCs (~0.5 mL) were applied to a 1×18 cm column of TOYOPEARL DEAE-650M (TOSOH Bioscience), equilibrated in 10 mM Tris-Cl, pH 7.4, and fractions of 2 mL were collected. After 20 fractions, the column was eluted with an 80 mL gradient of NaCl (0–0.5 M). Appropriate aliquots were analyzed for Rha and Glc by anthrone assay.
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8

Purification and Characterization of Glycoinositol

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Prior to the molecular mass and constitution sugar analyses, the GI-containing fraction was further purified based on the EPS purification procedure described previously [25 (link)]: the concentrated GI fraction prepared from the culture supernatant of BM53-1 was mixed with the same volume of acetone and incubated overnight at 4 °C. The precipitate was collected and dissolved into a 50 mM Tris-HCl buffer (pH 8.0) and treated with nuclease and proteinase K. The GI collected by ethanol precipitation was dissolved into distilled water and applied to the anion exchange resin (TOYOPEARL DEAE-650M, Tosoh Bioscience, Tokyo, Japan). The column through fraction was pooled and then dialyzed against distilled water using an Amicon Ultracel-10K ultrafiltration device.
The molecular mass of the GI was estimated with gel-filtration column (Sephacryl S-500 HR, GE Healthcare, Chicago, IL, USA) chromatography using a high-performance liquid chromatography (HPLC) system as follows: a 50 mM Tris-HCl buffer (pH 8.0) was used as a mobile phase at a flow rate of 0.5 mL/min. The eluent was divided into 95 fractions every 3 min from 0 to 285 min, and the GI content was monitored using a phenol-sulfuric acid method [37 (link)]. The molecular mass was calculated from the calibration curve made by dextran standards of known molecular weights: 25, 50, 270, and 670 kDa.
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9

Extraction and Purification of Exopolysaccharides from Lactobacillus

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The stock culture of the IJH-SONE68 strain stored at −80 °C was inoculated into a fresh MRS medium. After the two-day standing cultivation at 28 °C, the cells collected by centrifugation were washed with a sterilized phosphate-buffered saline (PBS: pH 7.4) and resuspended into the same volume of PBS. The resulting cell suspension was inoculated into a modified SDM with a 0.2% volume and grown at 28 °C for 2 days. After the cultivation, at a final concentration, a 4% (v/v) volume of trichloroacetic acid (TCA) solution was added to the culture broth. The culture supernatant obtained by centrifugation was added with the same volume of acetone. The resulting precipitate containing the EPS was dissolved in a 50 mM Tris–HCl buffer (pH 8.0). After treatment with nuclease and protease, the neutral and acidic EPSs were separated by column chromatography using the anion exchange resin (TOYOPEARL DEAE-650M, Tosoh Bioscience, Tokyo, Japan) as described previously [44 (link)]. Each of the purified EPSs was stored at −20 °C until use. Prior to the oral administration, the EPS samples were dialyzed against sterile distilled water by using Amicon Ultra (MWCO = 10 kDa, Merck Millipore Ltd., Carrigtwohill, Co., Cork, Ireland), and the concentrations (1.0 and 0.1 mg/mL) were adjusted with the sterile distilled water.
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10

Preparation of Unsaturated Alginate Oligosaccharides

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Sodium alginate (Nacalai Tesque, Extra Pure Reagent grade, product No. 31132-75) was treated with 0.1 mg/mL of endolytic poly(mannuronate) alginate lyase from Flavobacterium (Sigma-Aldrich) for 30 min at 25°C. The products were separated via anion-exchange chromatography [TOYOPEARL DEAE-650M (Tosoh)] and eluted with a gradient of ammonium bicarbonate 0 to 1 M. The oligosaccharide length was confirmed via thin-layer chromatography using standard markers. After lyophilization, the unsaturated alginate trisaccharide was dissolved in distilled water. Unsaturated tetramannuronate Δ4M substrate was prepared from alginate as reported (Nishitani et al. 2012) . To prepare PAΔ4M, Δ4M was labeled with 2-aminopyridine and purified via column chromatography as reported (Maruyama et al. 2015) .
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