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7 protocols using fluorchem hd2 camera

1

Western Blot Analysis of γH2AX, TBX18, and EAAT2

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All female samples were run on one gel under the same conditions; all male samples were run on another gel under the same conditions. Western immunoblotting was conducted as described previously [6 (link)].
Membranes were stained overnight using primary antibodies against γH2AX (1:500, Cell Signaling, Danvers, MA), TBX18 and EAAT2 (1:1000, Abcam, Toronto, ON), and actin (1:2000, Abcam, Toronto, ON). Primary antibody binding was detected using horseradish peroxidase-conjugated secondary antibodies and the Enhanced Chemiluminescence Plus System (Amersham Biosciences, Baie d'Urfe, Quebec). Chemiluminescence was detected using a FluorChem HD2 camera with FluorChem software (Cell Biosciences); gel images were saved and processed using Adobe Professional under the same conditions. Bands corresponding to antibody binding in all samples were carefully cropped; no images were spliced. The membranes were stained with Coomassie blue (BioRad, Hercules, CA) to confirm equal protein loading. Signals were quantified using the NIH Image J64 software and normalized relative to actin or Coomassie staining.
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2

Western Blot Analysis of PFC Proteins

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Western immunoblotting was conducted as previously described [14 (link), 33 (link), 76 (link)]. In brief, around 50 mg of PFC tissues were sonicated in ice-cold 1% SDS and immediately boiled. Protein concentrations were ascertained using the Bradford assay (BioRad, Hercules, CA). Equal amounts of protein (10-30 μg) were separated by SDS-PAGE into slab gels of 10-15% polyacrylamide and transferred to polyvinylidene difluoride membranes (Amersham Biosciences, Baie d'Urfé, Quebec). The membranes were incubated with primary antibodies against APE1, OGG1, DNMT1, DNMT3A, MeCP2, BMP4, DNMT3B, Laminin 1-2 (1:1000, Abcam), and actin (1:2000, Abcam) overnight at 4°C. Primary antibody binding was detected using horseradish peroxidase-conjugated secondary antibodies and the Enhanced Chemiluminescence Plus System (Amersham Biosciences, Baie d'Urfé, Quebec). Chemiluminescence was detected using a FluorChem HD2 camera with FluorChem software (Cell Biosciences). The membranes were stained with Coomassie blue (BioRad, Hercules, CA) to confirm equal protein loading. Signals were quantified using NIH Image J64 software and normalised relative to actin or Coomassie staining.
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3

Western Blot Protein Quantification

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Total protein extracts were prepared by sonicating cells harvested from two 10-cm cell culture dishes per sample in 100 μL of cold 1% sodium dodecyl sulfate (SDS) containing protease inhibitor (Roche). The protein amounts were quantified using Bradford assays (BioRad) and measuring the absorbance at 595 nm using NanoDrop 2000c (ThermoScientific). Equal amounts of proteins per lane (10–40 μg depending on the protein of interest) were separated by SDS-polyacrylamide gel electrophoresis (PAGE) in slab gels of 6–15% polyacrylamide and transferred to polyvinylidene difluoride (PVDF) membranes (Hybond-P, Amersham Biosciences). The proteins were then incubated with primary antibody overnight at 4°C (S2), followed by incubation with a secondary horseradish peroxidase-conjugated antibody (S2). Antibody binding was detected using an enhanced chemiluminescence plus immunoblotting detection system (Amersham Biosciences). Chemiluminescence was detected using a FluorChem HD2 camera with FluorChem software (Cell Biosciences). Unaltered PVDF membranes were stained with Coomassie blue (BioRad) to confirm equal protein loading. Chemiluminescence signals were quantified using NIH ImageJ 64 software. Pixel intensities of the protein bands of interest were normalized to GAPDH pixel intensities.
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4

Western Blot Analysis of Hippocampal Proteins

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Western immunoblotting was carried out as previously described (Silasi et al., 2004 (link); Kovalchuk et al., 2016a (link),b (link),c (link)). In brief, hippocampal tissues were sonicated in ice-cold 1% SDS and immediately boiled. Protein concentrations were determined using the Bradford assay (BioRad, Hercules, CA). Equal amounts of protein (10–30 μg) were separated by SDS-PAGE into slab gels of 10–15% polyacrylamide and transferred to polyvinylidene difluoride membranes (Amersham Biosciences, Baie d'Urfé, Quebec). Eight membranes were prepared. The membranes were incubated with primary antibodies against 4-HNE, AKT 1, NPAS4 (1:1,000, Abcam), ERK1/2, FOSB, PCNA (1:1,000, Cell Signaling), and actin (1:2,000, Abcam) overnight at 4°C. Primary antibody binding was detected using horseradish peroxidase-conjugated secondary antibodies and the Enhanced Chemiluminescence Plus System (Amersham Biosciences, Baie d'Urfé, Quebec). Chemiluminescence was detected using a FluorChem HD2 camera with FluorChem software (Cell Biosciences). The membranes were stained with Coomassie blue (BioRad, Hercules, CA) to confirm equal protein loading. Signals were quantified using NIH Image J64 software and normalized relative to actin or Coomassie staining.
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5

Immunoblotting Analysis of miRNA Machinery

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Western immunoblotting was conducted as previously described [114 (link)-117 (link)]. In brief, around 50 mg of PFC tissues were sonicated in ice-cold 1% SDS and immediately boiled. Protein concentrations were determined using the Bradford assay (BioRad, Hercules, CA). Equal amounts of protein (10-30 μg) were separated by SDS-PAGE into slab gels of 10-15% polyacrylamide and transferred to polyvinylidene difluoride membranes (Amersham Biosciences, Baie d’Urfé, Quebec). Eight membranes were prepared in total. Due to scarce amount of tissues, membranes were re-used and re-probed to allow for analysis of miRNA machinery and targets (this study), as well as epigenetic regulators (Kovalchuk et al., 2017, Aging, in press). The membranes were incubated with primary antibodies against BDNF, Dicer and Ago2 (1:1000, Abcam), and actin (1:2000, Abcam) overnight at 4° C. Primary antibody binding was detected using horseradish peroxidase-conjugated secondary antibodies and the Enhanced Chemiluminescence Plus System (Amersham Biosciences, Baie d’Urfé, Quebec). Chemiluminescence was detected using a FluorChem HD2 camera with FluorChem software (Cell Biosciences). The membranes were stained with Coomassie blue (BioRad, Hercules, CA) to confirm equal protein loading. Signals were quantified using NIH Image J64 software and normalised relative to actin or Coomassie staining.
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6

Quantitative Analysis of DNA Repair Proteins

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Western immunoblotting was conducted as described previously [50 (link)]. The membranes were incubated with primary antibodies against APE1, OGG1, DNMT1, DNMT3a, MeCP2 (1:1000, Abcam) and actin (1:2000, Abcam) overnight at 4° C. Primary antibody binding was detected using horseradish peroxidase-conjugated secondary antibodies and the Enhanced Chemiluminescence Plus System (Amersham Biosciences, Baie d'Urfé, Quebec). Chemiluminescence was detected using a FluorChem HD2 camera with FluorChem software (Cell Biosciences). The membranes were stained with Coomassie blue (BioRad, Hercules, CA) to confirm equal protein loading. Signals were quantified using NIH Image J64 software and normalised relative to actin or Coomassie staining.
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7

Western Blot Analysis of DNMT1 and MAT2A

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Protein was extracted by sonication of cells in 100 µL cold 1% SDS containing protease inhibitor (Roche). 40 µg of protein was separated by SDS-PAGE in slab gels of 6% (DNMT1) or 10% (MAT2A) polyacrylamide and transferred to Amersham Hybond-P polyvinylidene difluoride (PVDF) membranes (Amersham Biosciences). The membranes were incubated with primary antibodies overnight at 4°C (DNMT1 [Abcam], MAT2A [Abcam], GAPDH [Santa Cruz]). Antibody binding was revealed by incubation with horseradish peroxidase-conjugated secondary antibodies followed by ECL Plus immuno-blotting detection system (Amersham Biosciences). Chemiluminescence was detected using a FluorChem HD2 camera with FluorChem software (Cell Biosciences). The signals were quantified using NIH Image J64 software and normalized relative to GAPDH.
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