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16 protocols using tgfbr1

1

Prostate Cancer Cell Culture and Xenograft Protocol

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PC3, Du145, PPC-1, C4-2, and LNCaP cells were cultured in RPMI-1640 plus 7% heat-inactivated fetal bovine serum (FBS), 100 mg/ml streptomycin, and 200 U/ml penicillin (Life Technologies). VCaP cells were cultured in DMEM supplemented with 10% FBS and antibiotics. The non-tumorigenic human prostate epithelial cell line 9 (NHP9) was maintained in serum-free PrEBM medium (Clonetics) supplemented with insulin, epidermal growth factor, hydrocortisone, bovine pituitary extract, and cholera toxin. LAPC9 and LAPC4 were xenograft tumors (21 (link),22 (link)). NOD/SCID mice were purchased from the Jackson Laboratory and breeding colonies maintained in our animal facility under standard conditions. All animal experiments were approved by Institutional Animal Care and Use Committee. Antibodies were active caspase-3 (polyclonal antibody (pAb), R&D), Ki-67 (monoclonal antibody (mAb), DAKO), BMI-1 (mAb, Cell Signaling), TGFBR1 (pAb, Abcam), EGFR (mAb, Cell Signaling), GAPDH (pAb, Santa Cruz), BrdU (mAb, Sigma), CD44 (mAb, BD Pharmingen), CD133 (mAb, Miltenyi), α2β1 (mAb, Chemicon). Isotype control antibodies and FITC- or PE-conjugated secondary antibodies were from Chemicon. Other secondary antibodies were purchased from GE Healthcare.
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2

Immunohistochemical Analysis of TGF-β Signaling

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Frozen antler cartilage sections were fixed in 4% paraformaldehyde solution for 30 minutes and then washed three times with PBS and blocked with 3% BSA for 2 hours. After incubation with primary antibody TGFβ1 (1:200; Abcam), TGFBR1 (1:500; Abcam) or TGFBR2 (1:200; Abcam) overnight at 4°C, these sections were washed and then treated with Alexa Fluor Plus 488 goat anti‐rabbit IgG secondary antibody (Invitrogen) for 1 hour. Nuclei were stained with DAPI. Fluorescent signals were examined under a fluorescence microscope.
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3

Western Blot Analysis of EMT Markers

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RIPA lysis buffer (Beyotime, China) was used to extract total protein of each group according to the manufacturer's specification. Equivalent amounts of proteins from each group cells were subjected to SDS-PAGE electrophoresis and then transferred onto a polyvinylidene fluoride (PVDF) membrane (Sigma- Aldrich, USA). After being blocked in 5% fat-free milk for 1h at room temperature, membranes were incubated with specific primary antibodies overnight at 4°C with gentle shaking, and followed by detection with enhanced chemiluminescence system (SuperSignal West Femto trial kit, Pierce). Primary antibodies were as follows: TGFBR1 (1:3000; Abcam, MA, USA), E-cadherin (1:2000, Cell Signaling Technology, MA, USA), Vimentin (1:1000, Cell Signaling Technology, MA, USA), Snail1 (1:1000, Cell Signaling Technology, MA, USA). GAPDH (1:6000, Sigma, St. Louis, MO, USA) was used as loading control. The membranes were then incubated with HRP-labeled goat anti mouse/rabbit secondary antibodies (1:8000, Sigma Aldrich, St. Louis, MO, USA). After washes, Membranes were exposed to X-ray film (Kodak China Investment, China) to visualize the bands, then signals were detected using a chemiluminescence system (Bio-Rad, USA) and analyzed using Image Lab Software (Bio-Rad, CA, USA).
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4

C2C12 Cell Protein Expression Analysis

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C2C12 cells were seeded at 2 × 105 cells/cm2 into a 6 cm dish, and cell lysates were collected after VV stimulation from days 1 to 3. RIPA Lysis and Extraction Buffer (89900, Thermo Fisher Scientific Inc., Waltham, MA, USA) containing protease and phosphatase inhibitor (1:100; A32961, Thermo Fisher Scientific Inc., Waltham, MA, USA) was used to extract the cell lysate. Western blot analysis was performed with primary antibodies against stathmin (1:1000), decorin (1:1000), Col-I (1:500), FGF7 (1:1000), TGFBr1 (1:500) and PAK3 (1:500) (Abcam Inc., Cambridge, MA, USA), pAKT (1:500), AKT (1:2000), MyoD (1:1000) and myogenin (1:500) (Cell Signaling Inc., Danvers, MA, USA), β-actin (1:10,000) (Arigo Biolaboratories Corp., TE Huissen, Netherlands), which were incubated with the membranes at 4 °C overnight. After being washed 3 times for 15 min each, the membranes were incubated with an HRP-conjugated goat antibody anti-mouse or anti-rabbit IgG secondary antibody (Arigo Biolaboratories Corp., TE Huissen, Netherlands) for 1 h at RT. The proteins were detected using an ECL substrate kit (Abcam Inc., Cambridge, MA, USA). Band intensity was quantified by using ImageJ software (National Institutes of Health, Bethesda, MD, USA). Intensity data were normalized to GAPDH and indicated controls for the target protein fold changes calculation.
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5

Protein Expression Detection Protocol

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The experimental procedures for the extraction and detection of protein expression were performed following the protocols mentioned in the previous study [10 (link)]. The detailed information of antibodies were listed as follows: Nanog (Cat No. 14295-1-AP, 1:1000, Proteintech, Wuhan, China), ALG10 (Cat # ab124711, 1:3000, Abcam), Oct4 (Cat No. 11263-1-AP, 1:1000, Proteintech), Sox2 (Cat No. 11064-1-AP1:1000, Proteintech), TGFBR2 (Cat No. 66636-1-Ig, 1:1000, Proteintech), TGFBR1 (Cat # ab31013, 1:1000, Abcam), p-Smad2 (Cat # ab28088, 1:1000, Abcam), Smad2 (Cat No. 12570-1-AP, 1:1000, Proteintech), GAPDH (Cat No. 60004-1-Ig, 1:1000, Proteintech), Histone H3 (Cat No. 17168-1-AP, 1:1000, Proteintech) were used in this study. The full length uncropped original western blots used in their manuscript were shown in Supplementary Figure 1.
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6

TGF-beta Regulation of EMT Markers

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SPC‐A‐1 cells were cultured in the absence or presence of TGF‐β at various concentrations (0 ng/mL, 0.5 ng/mL, 1 ng/mL, 2 ng/mL, 5 ng/mL and 10 ng/mL) for 48 hours. The total proteins were extracted, subjected to 10% sodium dodecyl sulfate‐polyacrylamide gel electrophoresis (SDS‐PAGE; Beyotime, Shanghai, China) gel and transferred onto nitrocellulose membranes (Millipore, Billerica, MA, USA). The membranes were blocked with 5% nonfat milk at room temperature for one hour, followed by incubation with Vimentin (1:2000, Proteintech, USA), N‐cadherin (1:1000, Proteintech, USA), E‐cadherin (1:1000, Proteintech, USA), TGFBR1 (1:500, Abcam, USA) and GAPDH (1:5000, Proteintech, USA) overnight. Membranes were washed three times and incubated with HRP‐conjugated anti‐mouse or anti‐rabbit secondary antibodies (1:5000, Proteintech, USA) at room temperature for 1 hour. Finally, the immunoreactive bands were visualized by chemiluminescent detection.
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7

Western Blot Analysis of TGFBR1 Protein

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Briefly, 20ug total protein was loaded in each lane and transferred to a PVDF membrane (Bio‐Rad). The membrane was then blocked with 5% non‐fat dried milk and incubated overnight at 4°C with TGFBR1(Abcam) and β‐actin (1:2000 dilution; CMCTAG) primary antibody and incubated with horseradish peroxidase (HRP)‐conjugated goat secondary antibodies for 1 hour at room temperature. Protein bands were finally visualized by enhanced chemiluminescence (ECL) and detected using the ECL Detection System (Amersham Pharmacia Biotech).
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8

SDS-PAGE and Western Blotting Analysis

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SDS-PAGE was performed using a Novex 16% Tris-Glycine gel (Life Technologies/Invitrogen, Carlsbad, CA, USA) and a 15% e-PAGEL mini gel (ATTO Corporation, Tokyo, Japan). The gel was stained with Simply Blue Safe Stain (Invitrogen) or ProteoSilver Stain (Sigma-Aldrich). The apparent molecular weights of the protein bands were estimated by comparison with the SeeBlue Plus2 Pre-Stained Standard (Life Technologies/Invitrogen) or the Novex Sharp Protein Standard (Life Technology/Invitrogen). Duplicate gels were transblotted onto Invitrolon polyvinylidene difluoride (PVDF) membranes (Life Technologies/Invitrogen) and immunostained with porcine amelogenin or TGFBR1 (Abcam, Cambridge, UK) polyclonal antibodies. Immunopositive bands were visualized by 3,3′-diaminodbenzidine (DAB) for amelogenin or enhanced chemiluminescence for TGFBR1. Full images of the blots that were cropped in the main figures are shown in Supplementary Fig. S12.
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9

Immunohistochemical Analysis of Xenograft Tumors

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Xenograft tumor specimens from nude mice were fixed in 4% paraformaldehyde and subsequently embedded in paraffin. After dewaxing and hydration, antigen retrieval and blocking, the 5μm sections were incubated with specific primary antibodies overnight at 4°C. Primary antibodies were as follows: TGFBR1(1:200, Abcam, MA, USA), E-cadherin (1:300, Cell Signaling Technology, MA, USA), Vimentin (1:200, Cell Signaling Technology, MA, USA) and Snail1(1:200, Cell Signaling Technology, MA, USA). Then the sections were incubated with anti-mouse/ rabbit secondary antibody (Abcam, USA) for 30min at room temperature. Staining was performed using diaminobenzidine (DAB) kit (Sigma, USA). The images were obtained under a microscope (Olympus, Japan) with appropriate magnification.
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10

Western Blot Analysis of Key Signaling Proteins

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In all, 30 µg of cell lysates was subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, MA, USA). The membranes were blocked with 5% milk and then incubated with various primary antibodies at 4 °C overnight. The antibodies were directed against the following: VEGFA (dilution 1:500, Cat#: ab46154, Abcam, Cambridge, MA, USA), TGFB1 (1:100, Cat#: 3711, CST, Danvers, MA, USA), SMAD4 (1:500, Cat#: sc-7966, Santa Cruz, CA, USA), TGFBR1 (1:200, Cat#: ab135814, Abcam), and TGFBR2 (1:400, Cat#: ab78419, Abcam). Then, the membranes were incubated with the IRDye 680RD goat anti-mouse/rabbit IgG secondary antibodies at 1:10,000 dilutions (Cat#:926-68070/68071, LI-COR, NE, USA).
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