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4 protocols using mper lysis buffer

1

Western Blot Analysis of Protein Lysates

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Total cell lysates were prepared from biopsy protein following Qiazol (QIAGEN) RNA extraction. Briefly, protein pellets were resuspended in Laemmli buffer, incubated at 37°C for 30 minutes, vortexed briefly, and heated to 95°C for 5 minutes before electrophoresis. Cells were lysed using MPER lysis buffer (Sigma-Aldrich, St. Louis, MO) supplemented with protease inhibitors (Roche) and sodium orthovanadate (10 mM) (Sigma-Aldrich). Loading buffer (Life Technologies) was added and samples were heated to 95°C for 5 minutes, subjected to electrophoresis on 4-12% NuPAGE Bis-Tris gels (Life Technologies), transferred to nitrocellulose membranes (Life Technologies), and visualized using the Odyssey CLx system (LI-COR Biosciences, Lincoln, NE) with IRDye 800RD goat anti-rabbit (LI-COR) and IRDye 680RD goat anti-mouse (LI-COR Biosciences) secondary antibodies. Primary antibodies were: anti-LRRC31 (ab100379; Abcam PLC, Cambridge, UK) and anti-HSP90 (AF7247; R&D Systems, Minneapolis, MN). Blots were quantified using Image Studio (LI-COR).
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2

Western Blot Analysis of Protein Lysates

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Total cell lysates were prepared from biopsy protein following Qiazol (QIAGEN) RNA extraction. Briefly, protein pellets were resuspended in Laemmli buffer, incubated at 37°C for 30 minutes, vortexed briefly, and heated to 95°C for 5 minutes before electrophoresis. Cells were lysed using MPER lysis buffer (Sigma-Aldrich, St. Louis, MO) supplemented with protease inhibitors (Roche) and sodium orthovanadate (10 mM) (Sigma-Aldrich). Loading buffer (Life Technologies) was added and samples were heated to 95°C for 5 minutes, subjected to electrophoresis on 4-12% NuPAGE Bis-Tris gels (Life Technologies), transferred to nitrocellulose membranes (Life Technologies), and visualized using the Odyssey CLx system (LI-COR Biosciences, Lincoln, NE) with IRDye 800RD goat anti-rabbit (LI-COR) and IRDye 680RD goat anti-mouse (LI-COR Biosciences) secondary antibodies. Primary antibodies were: anti-LRRC31 (ab100379; Abcam PLC, Cambridge, UK) and anti-HSP90 (AF7247; R&D Systems, Minneapolis, MN). Blots were quantified using Image Studio (LI-COR).
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3

Measuring Fluorescence Intensity in HEK293T Cells

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After 22 h of incubation of HEK293T cells in 12‐well plates, HBSS and M‐PER™ lysis buffer (Thermo Fisher Scientific #78501) and Halt™ Protease‐Inhibitor‐Cocktail (Thermo Fisher Scientific #78441) were stored on ice. After 24 h of incubation, cells were rinsed with ice‐cold 1× HBSS (Sigma‐Aldrich #55037) and in each well of the 12‐well plate the HBSS was replaced with 200 μl M‐PER™ lysis buffer. The plate was kept on ice and gently shaken for 5–15 min. Then, the lysate from each well was transferred to a 1.5‐mL tube and centrifuged at 14,000× g for 15 min. Finally, 50 μl of each supernatant was transferred to a 96‐well plate (Sarstedt #83.3924.300). Fluorescence intensity was measured on a TECAN Spark 20 M plate reader. To measure GFP intensity, an excitation wavelength of 473 nm was used with 20 nm bandwidth, and an emission wavelength of 518 nm was used with 20 nm bandwidth. Per measurement, 30 flashes were performed with an integration time of 40 μsec. To measure mCherry intensity, an excitation wavelength of 565 nm was used with 20 nm bandwidth, and an emission wavelength of 610 nm was used with 20 nm bandwidth. Per measurement, 30 flashes were performed with an integration time of 40 μsec. All conditions for each biological replicate were measured at the same time on the same 96‐well plate. A fixed z‐position was used to measure each well of the 96‐well plate.
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4

DARTS Assay for 6-G/HNF4α Binding

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For the validation of binding between 6-G and HNF4α the DARTS test was performed as described previously.44 (link) Briefly, Hepa1–6 cells were incubated with 25 μmol/L 6-G or 0.1% dimethyl sulfoxide for 48 hours and lysed with M-PER lysis buffer (Sigma-Aldrich) containing protease inhibitor. After centrifugation at 18,000g for 10 minutes, the supernatant was diluted with 0.5 M Tris-HCl containing 0.5 M HCl, 0.1 M NaCl, and 0.1 M CaCl2. The protein concentration was determined by BCA assay. Each sample was divided into 2 aliquots, one was subjected to proteolysis with pronase (Roche, Basel, Switzerland) and the other was used in a mock proteolysis. After digestion, Western blot analysis was performed.
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