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7 protocols using na 1.45 oil objective

1

Visualizing V. cholerae-Host Interactions

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To monitor the interaction between V. cholerae and human immune cells, fluorescence confocal images were taken with a Yokogawa CSU spinning disk unit mounted on a Nikon Ti-Eclipse inverted microscope using a 40x oil NA 1.3 objective (Nikon) and an Andor iXon-Ultra EMCCD camera. Experiments involving enteroid monolayers were imaged with a 20x air NA 0.75 objective. In addition, three lasers (488nm, 552 nm, 637 nm) were used for the excitation of fluorescent proteins and dyes. Images were acquired every 30 min at low excitation light intensities and 30 ms exposure time, using the EM-gain of the EMCCD camera. Focus drifts were corrected using the hardware autofocus system (PFS, Nikon). The hardware was controlled by Micro-Manager73 (link) or by NIS Elements (Nikon). Secreted proteins and type IV pili visualized by immunofluorescence staining were imaged with a 100x oil NA 1.45 objective (Nikon). For biofilm architecture analyses and tracking of bacterial growth on the macrophage surface a 100x oil NA 1.45 objective (Nikon) was used and an additional 2× lens was placed between the CSU and the Nikon Ti-E side port. The microscope was equipped with an incubation chamber to control the temperature and the CO2 levels during live-cell imaging.
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2

Visualizing Actin Dynamics in HeLa Cells

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HeLa cells (2×105 cells), expressing the enhanced yellow fluorescent protein-actin (fluorescence excitation/admission peaks: 513 nm/526 nm; encoded by pEYFP-Actin), were seeded on the 3.5-cm glass-bottom culture dishes (MatTek) coated with poly-L-lysine. Cells were grown overnight in Dulbecco's modified Eagle medium (DMEM) with 10% fetal bovine serum at 37°C in 5% CO2. The cells were then washed with PBS and the media was replaced with phenol red-free DMEM (GibcoBRL) containing ampicillin (100 µg/mL). To these cells, overnight-cultured bacteria harboring pQE60-RFP, which encodes red fluorescent protein (fluorescence excitation/emission peaks: 584 nm/607 nm), were added at a dilution of 1∶50 and left for 6 hours at 37°C and 5% CO2 in an incubator. After washing with PBS, the dishes were replenished again with red-free DMEM-containing 100 µg/mL ampicillin. The dish was then moved to an incubator chamber (Chamlide TC, Live Cell Instrument) (maintained at 37°C in 5% CO2) mounted on a Nikon (Eclipse Ti) inverted microscope equipped with a 100X/N.A 1.45 oil objective.
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3

Spinogenesis Experiments with Ketamine

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Spinogenesis experiments were performed as previously described14 (link) with the exception that cells were treated on DIV19 and fixed 24 h after treatment on DIV20. The images were taken on a Nikon HCA Confocal microscope a with a 100x/NA 1.45 oil objective. DMSO and ketamine (10 μM) were used as vehicle and positive controls, respectively.
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4

Visualizing Mitochondrial Morphology in T Cells

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CD8+ RTEs and MN T cells were stimulated as above and mitochondria and nuclear DNA were visualized using Mitotracker Red CMXRos (Thermo Fisher) and NucBlue Live ReadyProbes Reagent (Molecular Probes), respectively. Cells were allowed to settle onto poly-D-lysine (Sigma) coated glass-bottom petri dishes (MatTek) for 30 minutes before imaging. A Z-series with a 0.3 μm step size was collected at 37°C and 7% CO2 using a Ti-E widefield microscope with a 100X NA 1.45 oil objective (Nikon), a solid-state light source (Spectra X, Lumencor), and a sCMOS camera (Zyla 5.5 Megapixel). Mitochondrial morphology was scored in a blinded fashion as “fragmented”: spherical mitochondria < 1.5 μm in diameter; “intermediate”: oblong and < 2.5 μm in length; and “reticular”: elongated and highly connected.
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5

Spinogenesis Assay with Ketamine

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Spinogenesis experiments were performed as previously described5 (link) with the exception that cells were treated on DIV20 and fixed 24 h after treatment on DIV21. The images were taken on a Nikon HCA Confocal microscope a with a 100x/NA 1.45 oil objective. DMSO and ketamine (10 μM) were used as vehicle and positive controls, respectively.
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6

Spinogenesis Experiments with Ketamine

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Spinogenesis experiments were performed as previously described14 (link) with the exception that cells were treated on DIV19 and fixed 24 h after treatment on DIV20. The images were taken on a Nikon HCA Confocal microscope a with a 100x/NA 1.45 oil objective. DMSO and ketamine (10 μM) were used as vehicle and positive controls, respectively.
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7

Visualizing Cytoskeletal Dynamics in Transfected HEK293 Cells

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HEK293 (ThermoFisher) cells transfected with hACF7 GFP-EF1-EF2-GAR (residues 7018–7206, wild-type/mutant), GFP-EF1-EF2 (residues 7018–7116), or GFP-GST-EF1-EF2 (residues 7018–7116) constructs were fixed or imaged live 14–16 hrs post transfection. Cells were fixed with 4% paraformaldehyde in PHEM (5 mM HEPES, 60 mM PIPES pH 7.0, 10 mM EGTA, and 2 mM MgCl2) for 20 min. PBS-Triton (PBST)(0.5%) and PHEM-Triton (0.2%) supplemented with 1% normal bovine serum (Fisher Scientific) were used to permeabilize and block the cells, respectively. Antibodies were diluted in PHEM supplemented with 1% normal bovine serum. Antibodies used for immunofluorescence included a mouse monoclonal anti-α-tubulin antibody (clone DM1a, T6199; 1:500) (Sigma-Aldrich) and a Cy3-α-mouse conjugated secondary antibody (1:500) (Jackson ImmunoResearch Laboratories). Nuclei were stained with 4’, 6-diamidino-2-phenylindole (1:2000) (Molecular Probes, Invitrogen). Cells were mounted in fluorescence mounting medium (Dako). Images were acquired using an Eclipse Ti microscope with a 100x oil NA-1.45 objective (Nikon) by a Coolsnap HQ camera (Photometrics), driven by NIS Elements software (Nikon). Representative images were processed using Photoshop CS5 (Adobe Systems) and ImageJ (National Institutes of Health).
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