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19 protocols using 3 brpa

1

Inhibition of Glycolysis and Akt Signaling

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Akti 1/2 was purchased from Calbiochem, rapamycin, 2-deoxy-D-glucose (2-DG), dichloroacetate (DCA) and 3-bromo pyruvate (3-BrPA), were from Sigma-Aldrich, PF-04691502, torin1 and MK2206 were from Selleckchem, lonidamine from LTK Laboratories and NVPBEZ235 were from Axon Medchem. A derivative of 3-BrPA, 3-bromo-2-oxopropionate-1-propyl ester (3-BrOP), was synthesized by esterification of 3-BrPA with 1-propanol (Sigma-Aldrich) as previously described [82 (link)]. siRNA to Akt1 and 2 were from Origine (Rockville, MD, USA).
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2

Mitochondrial ATP Depletion Assay

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ATP levels were used to assay the mitochondrial activities. Samples were incubated for 2 h with 10uM of bromopyruvate analogue (3-BrPA) (EMD Millipore, cat# 376817), an inhibitor of glycolytic hexokinase II enzyme. Measurements were collected with Mitochondrial ToxGlo Assay that is based on the differential measurement of biomarkers associated with changes in cellular ATP levels relative to vehicle-treated controls. The results are collected with bioluminescent readouts. Bioluminescent signal is proportional to ATP concentration (Promega, cat# G8000).
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3

Mitochondrial Activity in AMD RPE

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ATP levels of the RPE monolayers were measured with the Mitochondrial ToxGlo Assay (Promega, Madison, WI, USA). To assay the mitochondrial activity in AMD and normal RPE, the ATP measurement was performed following 2-h incubation with or without 10 μM of the bromopyruvate analog (3-BrPA), an inhibitor of the glycolytic enzyme hexokinase II (EMD Millipore, Billerica, MA, USA).
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4

Characterizing Multi-Drug Resistance Mechanisms

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3-BrPA, verapamil (VRP), paclitaxel, MTT and rhodamine 123(Rh123) were purchased from Sigma-Aldrich (Deisenhofen, Germany). Doxorubicin (Dox) and epirubicin (EPI) were purchased from Zhejiang HISUN Pharmaceuticals Co (Zhejiang, China). Daunorubicin was supplied by National Institute for the Food and Drug Control (Beijing, China). Mouse anti-ABCB-1/P-gp was obtained from Santa Cruz (CA, USA). Other antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA). Alexa Fluor 488 goat anti-mouse IgG (H+L) was purchased from Life Technologies (Gaithersburg, MD, USA).
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5

Induction and Treatment of Pulmonary Hypertension in Rats

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Adult male Sprague-Dawley rats weighing 250 to 300 g were purchased from the Vital River Laboratory Animal Technology Company of Beijing in China and maintained in a temperature-controlled room with a 12-12 h light-dark cycle. All animal care and experiments were approved by the Institutional Animal Care and Use Committee of Capital Medical University and performed in accordance with the Management of Laboratory Animals published by the Ministry of Science and Technology of the People's Republic of China.
The PH model was induced by a single intraperitoneal injection (60 mg/kg, i.p.) of MCT (Catalog No. C2401; Sigma-Aldrich, Saint Louis, USA). Control animals were given a single intraperitoneal injection of the same volume of 0.9% NaCl. For the 3-BrPA (Catalog No. 16490; Sigma-Aldrich) treatment, MCT-induced PH rats were injected intraperitoneally with either 3-BrPA (2 mmol/L, i.p.)[12 (link)] or the same volume of phosphate-buffered saline (PBS) every other day beginning on the day of MCT injection to 4 weeks of follow-up.
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6

Cytotoxicity Assays for Cell Lines

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RPMI-1640 medium and fetal bovine serum (FBS) were purchased from Gibco (Thermo Fisher Scientific, Waltham, MA, USA). 3-BrPA, SCT and the chemotherapeutic agent 5-fluorouracil (5-FU) were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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7

Metabolic Phenotyping of Breast Cancer Cells

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Unless otherwise mentioned, all chemicals including 3-BrPA were purchased from Sigma-Aldrich Co., (St. Louis, MO, USA). Cell culture media, antibiotics and geltrex were procured from Invitrogen/Life Technologies Inc., (Carlsbad, CA, USA). Chamber slides used for confocal microscopy were purchased from Nalgene/Nunc Inc., (Waltham, MA, USA). Primary antibodies used for immunoblotting and immunofluorescence were MMP-2, MMP-9 and cytokeratin-18 (CK-18) (Cell Signaling Inc., Danvers, MA), Monocarboxylate Transporter (MCT)-4, MCT-1, Adenine tri phosphatase 5E (ATP5E) and lactate dehydrogenase A (LDH-A) (Santa Cruz Biotechnology Inc., Santa Cruz, CA) and α-smooth muscle actin (α-SMA) and anti-leptin antibodies (Sigma Aldrich Co.). Secondary antibodies were purchased from Santa Cruz Biotechnology Inc.
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8

Cell Lines Culture Conditions

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The cell lines used in this research were TE-1, TE-11, ECA-109, KYSE150 and HEEC, which were purchased from Shanghai biology institute (Shanghai, China). 10% fetal bovine serum (GIBCO, USA) was added to culture media that containing 2 mM l-glutamine and 1% penicillin/streptomycin (Solarbio, China). Cells were grown in DMEM Medium (Trueline, USA) and maintained in a 5% CO2, at 37 °C incubator. This study was in agreement with the Declaration of Helsinki. The AKT inhibitor LY294002 (25 μmol/L, S1105, Selleck, USA) and glycolytic inhibitor 3-BrPA (20 μmol/L, 1113-59-3, Sigma, USA) were dissolved in DMSO (D2650, Sigma, USA) and used to culture cells.
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9

Synovial Fibroblast Cultures and Inhibitors

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SF cultures were established by explant growth of small arthroscopic biopsy fragments of synovial tissues obtained from the knee of patients without previous joint disease at elective arthroscopy for minor traumatic lesions, or patients with RA or osteoarthritis (OA) at the time of prosthetic replacement surgery. Human adult pulmonary fibroblasts (HPF) were purchased from ScienCell Research Laboratories (Carlsbad, CA, USA). Normal skin dermal fibroblasts (DF) were established by explant growth of skin biopsies obtained from healthy individuals during minor skin surgery. All fibroblast cultures were maintained in 10% fetal calf serum (FCS)-DMEM medium (Lonza, Verviers, Belgium). Patients signed a written informed consent, and the study was approved by the Ethics Committee of Hospital 12 de Octubre, Madrid, Spain. All methods involving humans were performed in accordance with the relevant guidelines and regulations.
Where indicated, cells were treated for 8 h with inhibitors 40 mM 2-DG, 25 μM 3BrPa, or 6 μM OL (Sigma-Aldrich, Madrid, Spain).
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10

Generating Tumor-Specific Cytotoxic T Cells

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We have previously generated a human papillomavirus (HPV) E7-expressing tumorigenic cell line, TC-1 [17 (link)], and a firefly luciferase-expressing TC-1 cell line, TC-1-luc [2 (link)] (GenBank Accession LC456627.1). The H-2Db-restricted HPV16 E7aa49–57 peptide, RAHYNIVTF, was synthesized by Macromolecular Resources (Denver, CO) at a purity of ≥80%. PE-conjugated anti-mouse CD8a (clone 53.6.7), FITC-conjugated rat anti-mouse IFN-γ (clone XMG1.2) antibodies were purchased from BD Pharmingen (San Diego, CA). PE-conjugated, HPV16 E749–57 peptide loaded H-2Db tetramer was provided by NIAID tetramer core facility (Atlanta, GA). 3-BrPA, Benzo(a)pyrene (B(a)P, 99% pure), and tricaprylin were purchased from Sigma-Aldrich (St. Louis, MO).
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