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Yeast extract peptone dextrose agar

Manufactured by Merck Group
Sourced in United States, Germany

Yeast extract peptone dextrose agar is a culture medium used for the growth and isolation of a wide range of microorganisms, including yeasts and bacteria. It provides the necessary nutrients for microbial growth, including carbon sources, nitrogen sources, and other essential growth factors.

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6 protocols using yeast extract peptone dextrose agar

1

Chitosan-based Antifungal Formulation Development

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Chitosan (CS), with an average molar mass of 290 kDa and 81.6% deacetylation degree (as previously determined by viscometry, respectively by NMR analysis [19 (link)]) was provided by Merck Chemical (Saint Louis, MO, USA). L-(+)-Lactic acid (LA) and anhydrous glycerin (Gly) were purchased from Chemical Company (Iași, Romania). Nystatin (NYS) drug, internationally qualified by USP Reference Standard, with particle sizes under 50 µm (Figure S1 in Supplementary Materials) was supplied by Antibiotice SA, Iași, Romania. Aqueous Propolis 30% (w/v) (PRO) with 7.72 mg/mL polyphenols and 0.26 mg/mL flavones/flavonoids contents (spectrophotometrically determined according to Singleton et al., 1999 [20 (link)] at APHIS-DIA Laboratory, Cluj-Napoca, Romania) was purchased from Dapis Transilvania (Cluj-Napoca, Romania). All the analytical grade chemicals were used as received. Candida albicans ATCC 90028 and Candida glabrata ATCC 90030 were provided by American Type Culture Collection (Manassas, VA, USA). Yeast Nitrogen Base Agar with dextrose and Yeast Extract Peptone dextrose Agar (YPD) were purchased from Merck Chemical (Saint Louis, MO, USA), while Sabouraud dextrose agar (SDA) was acquired from Biokar Diagnostics (Allonne, France).
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2

Isolation and Characterization of Cheese Microbiota

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The cheese samples belonging to Tulum, Kashkaval, Mihalic, Orgu, White, Sepet, and Goat cheese varieties were collected (n = 50). Samples (25g) were weighed in sterile bags and homogenized in 225 mL buffered peptone water using a peristaltic blender (Stomacher, ISOLAB, Turkey). The decimal dilutions of the samples were spread on YEPD (yeast extract-peptone-dextrose) agar (Merck, Darmstadt, Germany) medium with 0.1 g/L chloramphenicol (Merck, Darmstadt, Germany) added and incubated during 2-6 days at 28 °C. One to three colonies were selected randomly from the YEPD agar, subcultured to obtain pure cultures on YEPD medium (Capece & Romano, 2009) (link).
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3

Yeast Strain Isolation and Characterization

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The yeast strain used in this study was originally isolated from the intestine of zebrafish (AB strain) that were reared in a recirculating system (Pentair Aquatic Eco-Systems, NC, USA) at Nord University, Bodø. The isolated yeast colonies were identified by PCR amplification and Sanger sequencing of the internal transcribed spacer 2 (ITS2) region of the fungal rDNA, using fITS7 (GTGARTCATCGAATCTTTG) and ITS4 (TCCTCCGCTTATTGATATGC) primers (23 (link), 24 (link)). Identification at the species level was determined by BLASTN similarity searches against the National Centre for Biotechnology Information (NCBI) GenBank database using default parameters. Pure yeast cultures were prepared and stored in 30% (v/v) glycerol (Sigma-Aldrich, St. Louis, MO, United States) at −80°C. Prior to use in the exposure studies, the cultures were revived on yeast extract peptone dextrose agar (Sigma-Aldrich) plate and broth supplemented with 0.025% chloramphenicol (Sigma-Aldrich). A single colony from the agar plate was inoculated and further grown in yeast extract peptone dextrose broth at 28°C, shaking the culture flasks at 180–200 rpm for 24 h. The cultured yeast cells were then harvested by centrifugation at 10,000 rpm for 10 min, washed and resuspended in sterile phosphate-buffered saline (PBS, Sigma-Aldrich) to a final concentration of 2 × 105 CFU/ml for the exposure study.
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4

Yeast Isolation and Characterization

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Debaryomyces sp. and Pseudozyma sp. used in this study were originally isolated from the intestine of Atlantic salmon and zebrafish, respectively, at Nord University, Bodø. The isolated yeast colonies were identified by PCR amplification and Sanger sequencing of the internal transcribed spacer 2 (ITS2) region of fungal rDNA. Pure cultures of the yeasts were prepared and stored in 30% glycerol (Sigma-Aldrich St. Louis, MO, United States) at -80°C. Prior to use, the cultures were revived on yeast extract peptone dextrose agar (Sigma-Aldrich) plate and broth supplemented with 0.025% chloramphenicol (Sigma-Aldrich). They were further grown in yeast extract peptone dextrose broth at 28°C, shaking the broth at 180–200 rpm for 24 h. The cultured yeast cells were harvested by centrifugation at 10,000 rpm for 10 min. Subsequently, the harvested cells were washed and resuspended in sterile phosphate-buffered saline (PBS) to obtain a final concentration of 2 × 105 CFU/ml for the following exposure study.
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5

In Vivo Fungal Burden Evaluation

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At days 2 and 5 postinfection, mice were treated with 10 µl of coelenterazine (0.5 mg/ml in methanol-H2O [1:10]; SynChem, OHM) in the vaginal lumen. Afterward, mice were imaged with the IVIS-200TM imaging system (Xenogen Inc.) under anesthesia with 2.5% isoflurane. Total photon emission from vaginal areas within the images (region of interest [ROI]) of each mouse was quantified using the Living ImageR software package.
At days 2 and 5 postinfection, the fungal burdens of vaginas were also evaluated by plating serial dilutions of organ homogenates onto yeast extract-peptone-dextrose agar plus chloramphenicol (50 µg/ml) (both from Sigma-Aldrich) and counting the CFU.
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6

Growth Conditions for Fungal Strains

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All fungal strains are summarized in Table 1. T. marneffei PM1 and the genetically- modified derivatives of PM1 were grown on Sabouraud dextrose agar (SDA) (Oxoid), while Pichia pastoris GS115 and its derivatives were grown on yeast extract peptone dextrose agar (Sigma).
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