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Jasp statistical software

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JASP is a free and user-friendly statistical software that provides a wide range of statistical analyses and visualizations. It offers a comprehensive set of tools for researchers and analysts to explore and analyze their data.

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16 protocols using jasp statistical software

1

Impacts of Exotic Plant Inflow on Floodplain Ecosystems

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To understand how the inflow of exotic plants is affected by the vegetation development and bird diversity, Discriminant Analysis for Principal Component (DAPC) was performed using the Statistica software program (version 7) on the vegetation data obtained from the floodplains. Pathway analysis was conducted to examine the impact of seed dispersal types and the external morphology of vegetation on the development of exotic plant species. This analysis was carried out using the JASP statistical software (version 0.14.1). The input data for the pathway analysis consisted of the number of species dispersed by water/wind, animals, mechanical trait, and gravity, as well as vine, runner, rosette, and rhizomatous plants. Additionally, the ratio of exotic to native plant species was also considered. The collected data was organized sequentially as per observational time.
Vegetation development is known to be affected by bird migration patterns in the area and seasonal changes, especially given that the plants in the temperate seasonal forests of the northern hemisphere die due to seasonal changes post September. As such, data after September was excluded from the DAPC analysis. All the data was standardized before conducting path and DAPC analysis to eliminate errors generated by variations in units of each variable [32 ].
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2

Statistical Analysis of Experimental Data

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JASP statistical software (Version 0.13.1) was used to conduct the analysis with a combination of the R programming language implemented in RStudio v. 3.6.1 (R Core Team, 2019 ) with a “tidyverse” package (Wickham et al., 2019 (link)) for the creation of plots. Post hoc power test in G*Power 3.1 (Faul et al., 2009 (link)) was run for each analysis. Protocols from the performed power analyses, along with other materials, databases and reports are accessible at the Open Science Framework (OSF; https://osf.io/bsudg).
All experiments were approved by the local ethics committee. Informed consent was obtained from all participants before enrollment in the experimental procedures and data collection.
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3

Memory Performance Across Conditions

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JASP statistical software was utilized to analyze the data. For Experiment 1, a 2 (Time: Memory Retrieval 1 and 2) by 6 (Condition) ANOVA (analysis of variance) was employed to evaluate memory performances across the six conditions. For Experiments 2 and 3, a 2 (Time: Memory Retrieval 1 and 2) by 2 (Condition) ANOVA was employed to evaluate memory performances across the two conditions. Main effects (time and condition) and interactions are reported, with effect size estimates reported as eta-squared values (η2). Statistical significance was set at an alpha of .05. We intentionally did not correct for multiple comparisons, as the number of type I errors cannot decrease without increasing the risk of making a type II error. Further, the theoretical assumption behind correction for multiple testing is that all null hypotheses are true simultaneously, which was not of interest in our study (Perneger, 1998 (link); Rothman, 1990 (link)).
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4

Multivariate Analysis of Stem Cell Marker Modulation

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For the compound testing, the expression of various marker genes (NKX6-1, PDX1, GP2, GATA4, CD56, VIM, SOX2, SOX17, AFP, CDX2) was monitored at PP stage with FC. Multivariate linear regression analysis was performed on FC results with JASP statistical software (V0.14, JASP Team).
The flow cytometry results for each marker were set as a dependent variable. The tested compounds and respective concentrations were set as independent variables. The standardized regression coefficients (β) of the multivariate linear regression analysis are demonstrating the positive (increasing) or negative (decreasing) effect of the independent variable on the dependent variable. In addition, a p-value indicates whether this relationship is significant (p < 0.05: *, p < 0.01: **, p < 0.001: ***). The normalized regression coefficients of the multivariate linear regression analysis are depicted as a heatmap.
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5

Visual Tilt Aftereffects Estimation

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For each condition, we estimated the point of subjective equality corresponding to a 50% proportion of CW responses by fitting a logistic curve with the maximum likelihood method, using the Palamedes Toolbox.51 (link) The repulsive aftereffect size was defined as half the difference in the point of subjective equality between the CW and CCW adapt-tilt angles. The aftereffect sizes were then compared against zero by one-sample t-tests and across conditions by an ANOVA. Statistical analyses were performed using JASP statistical software.22 The statistical details of experiments can be found in the Results section. No methods were used to determine whether the data met assumptions of the statistical approach.
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6

Gender Differences in Anxiety Reactions

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JASP statistical software was used to analyze the data. The chi-square test was used to analyze the reactions according to gender, and ANOVA was used to analyze differences in anxiety levels according to the participant’s gender and their reactions facing the proposed situation. The level of significance was set at p ≤ 0.05.
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7

Correlation of Periodontal Defects and Regenerative Outcomes

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Descriptive statistics were recorded as mean values with standard deviation (meant ± SD). Shapiro–wilk analysis was used for distribution analysis of PD, horizontal and vertical FI at baseline. Wilcoxon signed-rank test was conducted to identify changes of horizontal and vertical FI as well as the change of PD from baseline to the latest follow-up visit. Subgroup analysis were calculated with Mann-Whiney and Kruskal–Wallis test. Spearman's Rho analysis was used to find correlation between the grade of periodontitis, horizontal FI degree and baseline PD. Univariate logistic regression was used to evaluate possible factors related to failure cases. Kaplan Meier curve was utilized to detect the predictability over time according to defect types, the degree of horizontal and vertical FI. The statistical significance of P value was set at 5%. All collected data and statistical analysis were documented and performed with SPSS (IBM SPSS Statistics for Mac, Version 25.0. Armonk, NY: IBM Corp) and JASP statistical software (Version 0.14.1.0).
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8

Continuous and Discrete Data Analysis

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Mean and median values and standard deviations and interquartile ranges to summarize continuous parameters were used. For discrete parameters, we used counts and percentages. Additionally, we compared before and after values for continuous measures with paired t-tests and repeated measures analysis of variance (r-ANOVA). In contrast, for discrete data, we used the chi-square test. All statistical analyses was conducted with the JASP statistical software (JASP Team, 2021 ).
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9

Correlating Clinical Improvements with Brain Normalization in MDI

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Assuming clinical change occurs in MDI as a function of the intervention, we will examine correlations between the change scores of the MISS and WOSI and changes scores of brain structure and function to test the hypothesis that clinical improvements will correlate with brain normalisation in MDI post intervention with the WIP1.
Statistical analysis of whole brain fMRI data will be performed using FSL.78 (link) Statistical analysis of DWI will be performed using MRTrix3.79 (link) ROI and clinical data will be analysed using Bayesian models in JASP statistical software.80 (link)
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10

Evaluating Activity Changes in Dementia

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Quantitative analysis was completed with JASP statistical software (version 0.16.3; JASP Team, 2022). Baseline participant characteristics were described as mean (standard deviation) or percentage (number) by participant type (people living with dementia, care partners). Change in continuous outcomes that were reported by both people living with dementia and care partners (physical and cognitive activity levels) were analyzed using a two-way mixed ANOVA with a within-subject factor for time (pre-program vs. post-program), a between-subject factor for participant type (people living with dementia vs. care partners), and an interaction for time*participant type. Significant main effects were followed with paired comparisons using Tukey’s test. Change in outcomes that were reported by only one group (people living with dementia or care partners) were analyzed with a paired t-test. Significance was set at p < 0.05.
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