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Clone ac 15

Manufactured by Merck Group
Sourced in United States, Germany, United Kingdom

The Clone AC-15 is a laboratory equipment designed for cloning applications. It is a centrifuge that can be used to separate and concentrate biological samples, such as DNA, proteins, or cells. The Clone AC-15 has a compact design and is capable of handling a range of sample volumes.

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21 protocols using clone ac 15

1

Western Blot Analysis of Protein Expression

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Blood samples for Western blotting were obtained from the tail vein and erythrocytes were lysed. Total protein lysates and transfer were performed as described previously [19 (link)]. The following primary antibodies were used: mouse monoclonal anti-HA, clone 6E2 (Cell Signaling, Danvers, USA), mouse monoclonal anti-beta-actin, and clone AC-15 (Sigma-Aldrich, Steinheim, Germany). Secondary goat anti-mouse horseradish peroxidase (HSP)-conjugated antibody was used (Dako Cytomation, Glostrup, Denmark) (see Additional file 7: Table S2).
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2

Binding Assay for HC/B Uptake in Neurons

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Neurons were exposed to 100 nM HC/B in high-K+ buffer containing 87 mM NaCl, 56 mM KCl, 1.5 mM KH2PO4, 8 mM Na2HPO4, 0.5 mM MgCl2, and 1 mM CaCl2 for 5 minutes at 37°C. Cells were then washed three times with PBS. Binding of HC/B was examined with two complementary approaches: (1) For immunostaining, neurons were fixed with 4% paraformaldehyde and permeabilized with 0.3% Triton X-100 in PBS. Images were collected using a Zeiss 880 laser scanning confocal microscope with a 40× oil objective. At least three representative images were collected per condition. (2) For immunoblot analysis, the final concentration of proteins for neuron binding is 0.1 μM, and the total volume is 200 μl. Neurons in each well were lysed in a lysis buffer (PBS with 1% Triton X-100, 0.05% SDS and protease inhibitor cocktail [Roche], 80 μL per well in 24-well plates). The 20-μl 5× loading buffer was mixed with the supernatant of lysed cells. Samples were heated to 56°C for 5 minutes, lysates were centrifuged for 10 minutes at 4°C, and then 5-μl supernatants were subjected to SDS-PAGE and western blot analysis. Binding of HC/B was detected using a monoclonal human anti-HA antibody. The antibodies used were purchased from the indicated vendors: mouse monoclonal antibody for actin (Clone AC-15, Sigma), mouse monoclonal anti-HA (16B12, Covance), and rabbit polyclonal antisynapsin (Millipore).
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3

Western Blot Quantification Protocol

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Western blots were carried out according to the Amersham ECL Plex western blotting system (GE Healthcare) per the manufacturer's recommendations. Resolution of 30 μg of protein from each lysate was achieved using Novex 10% NuPAGE gels (Life Technologies). Blots were probed with mouse monoclonal HA.11 16B12 (Covance Inc.) (36 (link)) overnight at 4°C with shaking, or with mouse monoclonal anti-ß-actin antibody, clone AC-15 (Sigma-Aldrich) (37 (link)). Secondary antibody ECL Plex goat-α-mouse IgG Cy5 (GE Healthcare) (38 (link)) were used at a dilution of 1:2500. Laser scanning of blots was carried out using the Typhoon Trio™ (GE Healthcare Life Sciences), then quantified using ImageQuantTL software (GE Healthcare Life Sciences).
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4

Quantifying Lung mCRAMP Protein Levels

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Lung tissue was homogenised (Precellys CK14 (Kit ceramic, 1,4mm, 2ml tubes, #432-3751, settings 5000-2×50, Precellys®24 tissue homogeniser, Bertin Technologies) in MPer (Thermo Fisher Scientific, Paisley, UK), lysed under constant agitation (4°C, 20 minutes) and supernatant collected. Protein content of lysed tissue supernatant was determined by BCA (Pierce®BCA Protein Assay Kit, Thermo Scientific), according to manufacturer’s instructions, to enable equivalent loading. Samples were incubated at 95°C for 10 minutes in sample buffer and reducing agent (NuPage LDS Sample buffer (4x) and NuPage Sample Reducing Agent (10x), Invitrogen). SDS page on 4-12% Bis/Tris gels in MES buffer (Invitrogen) was performed, protein was transferred to nitrocellulose (Nitrocellulose Membrane Filter paper, Sandwich, 0.2μm pore size, Life technologies) and membranes were exposed to anti-mCRAMP antibody (1:500, CRAMP antibody, PA-CPPL-100, Innovagen AB, Lund, Sweden) and anti-β-actin antibody (1:20000, clone AC-15, Sigma-Aldrich), followed by the respective IRDye®680LT or 800CW Li-COR labelled secondary antibody (Li-Cor Biotechnology, Cambridge, UK). Fluorescence intensity was quantified using a Li-Cor BioScience Odyssey 9120 Infrared Imaging System).
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5

Western Blotting Protocol for Protein Analysis

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Western blotting was conducted as previously described [4 (link)]. Samples for mass spectrometry were also used for western blotting after TEAB buffer was added. For this study, a primary monoclonal mouse anti-β-actin antibody 1:5,000 (clone AC-15, Sigma-Aldrich, Søborg, Denmark) and a primary polyclonal sheep anti-transthyretin (TTR) antibody 1:5,000 (ab9015, Abcam, Cambridge, UK) were used. Both antibodies were diluted in 2.5% (w/v) skim milk blocking buffer. Horseradish peroxidase (HRP)–conjugated secondary antibodies polyclonal goat anti-mouse immunoglobulins/HRP (Dako, Glostrup, Denmark) and rabbit anti-sheep IgG eavy and light chains (ab6747, Abcam, Cambridge, UK) were used, diluted 1;30,000 and 1:1;000, respectively, in 2.5% (w/v) skim milk blocking buffer.
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6

Western Blot Analysis of TP63 and α-SMA

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Whole cell lysates (20 μg/lane) were resolved in 10% SDS-PAGE from Bio-Rad (Hercules, CA). Blots were then probed with the indicated antibodies. Primary antibodies against TP63 Clone 10H7L17 (1:1000) was from Thermo Fisher Scientific (Cat# 703809 RRID: AB_2809251); α-SMA (1:1000) was from Abcam (Cat# ab5694, RRID: AB_2223021) and β-actin, Clone AC-15 (1:2000) was from Sigma-Aldrich (Cat# A1978, RRID:AB_476692). Secondary antibodies were from Cell Signaling Technology. Western blot images are quantified by using GeneGnome XRQ chemiluminescence imaging system and analyzed by GeneTools analysis software from Syngene (MD, USA).
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7

Western Blot Quantification of Protein Biomarkers

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Western blotting was performed as previously described [13 (link)] using a primary monoclonal mouse anti-β-actin antibody 1:5000 (clone AC-15, Sigma-Aldrich, St. Louis, MO, USA), a primary polyclonal rabbit anti-IL-18 antibody 1:500 (MBS2026569, MyBioSource, San Diego, CA, USA), and a primary polyclonal rabbit anti-S100A12 antibody 1:100 (MBS2026249, MyBioSource, San Diego, CA, USA), diluted in 2.5% (w/v) skim milk blocking buffer. Log transformed densitometric data was used to perform a paired t-test.
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8

STIP1 Western Blot Protocol

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After extraction in a lysis buffer containing 10% sucrose, 1% NP-40, 20 mM Tris-HCl (pH 8.0), 137 mM NaCl, 10% glycerol, 2 mM EDTA and a protease inhibitor cocktail (Roche Diagnosis, USA), 20 µg of total protein were resolved in a 10% sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) under reducing conditions, and then transferred to nitrocellulose membranes. The membranes were incubated with antibodies against STIP1 (1:5000, HPA039291, Sigma-Aldrich, USA) or β-actin (1:50000, clone AC-15; Sigma-Aldrich, USA) for 2 h. After incubating with anti-rabbit (for STIP1) or anti-mouse (for β-actin) peroxidase-conjugated secondary antibodies, the protein bands were detected using enhanced chemiluminescence (ECL) Western Blotting System (GE Healthcare, USA) and signals captured with an Alliance 9.7 instrument (UVITEC, UK).
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9

Validating CDC42 Antibody Specificity

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For validation of CDC42 antibody specificity, Western blotting was performed on whole cell lysates of MCF-7, SKBr3 and MDA-MB231 human breast cancer cell lines (obtained from the American Type Culture Collection; Rockville, MD, USA) using CDC42 antibody (clone PA1-092) at 1:1000 dilution and fluorescent secondary antibodies at 1:15,000 were used (IR Dye 800CW donkey anti-rabbit and 680RD donkey anti-mouse, LI-COR Biosciences, UK). 5% milk (Marvel original dried skimmed milk, Premier Food Groups Ltd, St Albans, UK) was used for blocking. Mouse β-Actin (A5441, Sigma-Aldrich; Clone AC-15; Sigma, UK) at 1:5000 was used as a house-keeping protein. A protein ladder (PageRuler Plus Prestained Protein Ladder, ThermoScientific, Waltham, MA, USA) was included. The fluorescence was then detected using the LI-COR Odyssey Fc machine to visualise the bands, with wavelengths 600, 700 and 800.
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10

Validating MED7 Rabbit Monoclonal Antibody Specificity

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For validation of MED7 rabbit monoclonal antibody [EPR15410 (Abcam, Ab187146, Cambridge, UK] specificity, western blotting was performed on whole-cell lysates of MCF-7, SKBr3 and HEK293 (obtained from the American Type Culture Collection; Rockville, MD, USA) cell lines using 1:1000 dilution of the primary antibody and fluorescent secondary antibodies (1:15,000) (IR Dye 800CW donkey anti-rabbit and 680RD donkey anti-mouse, LI-COR Biosciences, UK). Five percent milk (Marvel Original Dried Skimmed Milk, Premier Food Groups Ltd, St Albans, UK) was used for blocking. Mouse β-Actin (A5441, Sigma-Aldrich; Clone AC-15; Sigma, UK) at 1:5000 was used as a house-keeping protein. A protein ladder (Page Ruler Plus Prestained Protein Ladder, ThermoScientific, Waltham, MA, USA) was included. To visualise bands, fluorescence at wavelengths of 600, 700 and 800 nm was used on a Licor Odyssey Fc with image studio 4.0 (LI-COR Biosciences).
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