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6 protocols using cd16 cd32 fc block

1

Multiparametric Phenotypic Analysis of Cells

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For phenotypic analysis of cells, 1.5x106 cells were stained in PBS with 1:200 CD16/CD32 Fc Block (Biolegend) and 1:500 Live/Dead fixable dye (ThermoFisher) at 4°C for 15 min. Cells were washed then stained with 1:200 surface antibodies and multimers at 4°C for 30 min. Cells were washed then fixed in 2% paraformaldehyde. For intracellular staining, Cytofix/Cytoperm (BD Biosciences) was used at 4°C for 20 min, and cells stained intracellularly in Perm Wash Buffer (Biolegend) with 1:200 antibodies at 4°C for 30 min. For transcription factor stain, FoxP3 Transcription Factor Kit (eBioscience) was used per manufactures protocol. For complete antibody panel see Table S1. Representative gating found in Figures S4A and S4B.
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2

Neutrophil Isolation from Murine Skin

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10-mm skin punch biopsies were minced and digested in 3 mL RPMI containing 100 μg/mL DNase I (Sigma-Aldrich) and 1.67 Wunsch units/mL Liberase TL (Roche) for one hour at 37 °C on a rotor wheel. Single cell suspensions were generated by passing digested skin samples through 100-μm cell strainers and washed in RPMI and PBS. Live versus Dead cells were stained using Live/Dead Fixable Aqua Dead Cell Stain Kit (Thermo Fisher). Cells were treated with CD16/CD32 Fc Block (S17011E, Biolegend) for 10 min before incubation with the antibody cocktail: CD45-APC/Cy7 (30-F11, Biolegend), CD11b-PE/Dazzle594 (M1/70, Biolegend), CD11c-PE/Cy7 (N418, Biolegend), Ly6C-APC (HK1.4, Biolegend), Ly6G-BV421 (1A8, Biolegend), F4/80-BV605 (BM8, Biolegend) and SiglecF-BB515 (E50-2440, BD Bioscience). Data were collected using a CytoFLEX LX (Beckman Coulter) and analyzed using FlowJo (BD). Neutrophils were gated as live CD45+CD11b+Ly6G+.
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3

Profiling GITR and GITRL Expression

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CRL5946 cells were detached and resuspended in FACs buffer. Cells were stained for 10 min at 4 °C with a CD16/CD32 Fc block (Biolegend Inc.) and then a combination of the following human-specific antibodies: GITRL-APC conjugated (Clone#109101, R&D Systems co.) and GITR-PE conjugated (Clone#621, BioLegend Inc.). All samples were then washed twice with FACS buffer and fixed with 2% Paraformaldehyde for at least 30 min. BD LSR II flow cytometer (BD Biosciences) and FlowJo V10 software (FlowJo LLC) was then used to analyze the expression of GITR and GITRL on MPM cells.
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4

Antigen Presentation Assay for CAFs

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Different CAF subtypes and CD45-positive APCs were isolated by FACS from tumors transplanted in MHCII-EGFP host mice. apCAFs and APCs were sorted by their GFP fluorescence. Between 13,000-25,000 sorted cells were incubated with 25 μg/ml OVA peptide 323-339 or without a peptide, in 10% FBS/DMEM for 3 hours in U-bottom 96-well plates, in a standard 37°C 5% CO2 humid incubator. Lymphocytes were isolated from the spleen of OTII mice and were enriched for CD4+ T cells by negative selection using MojoSort mouse CD4 T cell isolation kit (Biolegend #480006). APC/CAF plates were washed twice, 50,000 CD4+ T cells were co-plated in 10% FBS/DMEM in each well, and plates were placed back in the incubator for 17 hours. Cells were then washed in 2% FBS/PBS, blocked in CD16/CD32 Fc Block (Biolegend, clone 2.4G2, 1:50) and stained with the following antibodies (all from Biolegend at 1:200): CD4 (Clone RM4-5), CD25 (Clone PC61) and CD69 (Clone H1.2F3) for 30 minutes at 4°C. DAPI (Sigma #D8417, 1 μg/ml) was added to cell suspension prior to reading on the cytometer.
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5

Comprehensive Immune Cell Profiling

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Prior to antibody staining, samples were blocked with Fc-block CD16/CD32 (Biolegend, 101320, 1:50) in FACS buffer for 10 min on ice to block nonspecific binding. For cell surface staining, cells were resuspended in the appropriate antibody cocktail and incubated for 30 min on ice protected from light. Samples were centrifuged and washed with a FACS buffer. For intracellular staining, cells were then collected and centrifuged for 5 min 350 g. Cells were fixed, permeabilized and stained for transcription factors using the True-Nuclear Transcription Factor Buffer Set (Biolegend, Cat# 424401) according to the manufacturer’s instructions. Viability was assessed by staining with DAPI. Information and dilution for antibodies used for flow cytometry are listed in Supplementary Table 1. For fibroblast sorting cells, PDGFRα+ GFP- tdTomato+ were selected and sorted directly into a lysis solution from Arcturus PicoPure RNA Isolation Kit (Thermofisher). For sample validation, cells were plated in poly-L-lysine treated (Sigma) glass coverslips in 12-well plates and cultured for 24 h prior to IF. Immune cell profiling by flow cytometry was carried out by analysing 50.000 live singlets in each sample. All fluorescent data were analysed using BD FACSDiva Software (BD Bioscience).
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6

Fluorescence Microscopy of Immune Cells

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For conventional fluorescence microscopy analysis, BMDCs and B‐cells were stained with saturating amounts of fluorophore‐conjugated scFV (e.g., 10 μg ml−1 14.4.4 scFV‐AF647) or mAbs (14.4.4 mAb‐AF647, 11–5.2 mAb‐AF647, and IgG (H + L)‐AF647) for 30 min on ice, and washed twice with 10 ml 1× HBSS (Gibco) supplemented with 1% FBS (Biowest), 2 mM CaCl2, and 2 mM MgCl2 (Merck) prior to seeding the cells onto ICAM‐1‐coated glass slides. Cells were treated with the Fc block CD16/CD32 (BioLegend) at 20 μg ml−1 for 15 min prior to the addition of mAbs. For experiments involving chemical fixation, cell samples were treated with 4% PFA (Thermo Fisher Scientific) in 1× PBS for 15 min at room temperature and subsequently washed in 1× HBSS (Gibco) supplemented with 1% FBS (Biowest), 2 mM CaCl2 and 2 mM MgCl2 (Merck) to stop the fixation reaction.
Mid‐sections of BMDCs or B‐cells were recorded as z‐stacks (50 images with 0.3 μm spacing, total depth of z‐stack: 15 μm) and deconvolved with the ImageJ plugin iterative deconvolve 3D, which is based on the DAMAS (Deconvolution Approach for the Mapping of Acoustic Sources) algorithm (Dougherty, 2005 ). The point spread function in x, y, and z used to deconvolve the images was measured with single fluorescent beads (TetraSpeck Fluorescent Microspheres).
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