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2 protocols using nbp1 31883

1

Western Blot Analysis of BRIP1 and RTEL1

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Protein was extracted from cells using a lysis buffer (40 mM NaCl, 25 mM Tris pH 8, 2 mM MgCl2, 0.05% SDS, 2x Complete EDTA-free protease inhibitor (Roche), 0.4 µL mL−1 benzonase) with protein concentration determined by Bradford assay, comparing to BSA standards to ensure loading of an equal mass of protein into each lane. Protein and Laemmli buffer were heated to 100 °C for 5 min before loading into gel. For U2OS, NuPAGE Novex 4–12% Bis-Tris Gel (Invitrogen) was used. For MEFs, NuPAGE Novex 3–8% Tris-Acetate Gel (Invitrogen) was used. Samples were run on gels for 2 hr before transfer from gel to a nitrocellulose membrane. Antibodies used to bind proteins on membrane were pAb rabbit BRIP1/FANCJ antibody (1/10000, Novus Biologicals NBP1-31883), pAb rabbit RTEL1 antibody (1/5000, Novus Biologicals NBP2-22360). For loading control, mAb mouse anti-β-actin antibody (1/5000, Abcam ab8226) was used with U2OS and mAb mouse anti-α-Tubulin (1/10000, Sigma Aldrich T6199) was used with MEFs. Secondary antibodies used were: pAb swine anti-rabbit immunoglobulins/HRP (1/10000, Dako P0217) and pAb goat anti-mouse immunoglobulins/HRP (1/5000, invitrogen A16078). Visualisation was performed by exposure onto photographic film for U2OS and visualisation using Amersham ImageQuant 800 for MEFs. Full uncropped scans are available in the source data file.
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2

Western Blot Analysis of Testis Proteins

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Whole testis protein was extracted from mice by sonication in RIPA buffer (50 mM Tris, 150 mM NaCl, 0.1 % SDS, 0.5 %, deoxycholate, 1 % NP40, supplemented with 100 μg/mL PMSF and 1× complete protease inhibitor (Roche). Samples were boiled for 5 min in sample buffer, electrophoresed on SDS-polyacrylamide gels (8–12 %), and transferred to nitrocellulose membranes. Primary-antibody incubation was performed for 12 h at 4 °C at 1:1000 dilution (antibodies used are: MUS81 (NBP1-32054 from Novus Biochemicals), MSH4 (ab95096 from Abcam), MSH5 (LS-C101911 from LsBio), MLH1 (550838 from BD pharmingen), β-Tubulin (T8328 from Sigma), β-Actin (A2228 from Sigma), BLM (a gift from Dr. Raimundo Freire), BRIP1/FANCJ (Novus, NBP1-31883), and BRCA1 (a gift from Dr. Satoshi Namekawa). Incubation with secondary antibodies was performed for 2 h (secondary HRP-conjugated antibodies were obtained from Pierce, Life Technologies). Signal detection was carried out using the superSignal substrate (Thermo Scientific). Images were captured with BIO RAD Image Lab 5.1 and analyzed by ImageJ (http://rsbweb.nih.gov/ij). Quantitation of Western blot signals was normalized to Actin or Tubulin signals, depending on which controls was used for a specific antibody.
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