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3 protocols using spermidine trihydrochloride

1

Fluorescent Imaging of Bacteriophage DNA

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Spermidine trihydrochloride (SPD) was purchased from Nacalai Tesque (Kyoto Japan). Polyethylene Glycol 6,000 (PEG), Dextran 200,000 (DEX) and the antioxidant 2-mercaptoethanol (2-ME) were purchased from FUJIFILM Wako Pure Chemical Corporation (Osaka, Japan). T4 GT7 bacteriophage DNA (166 kbp with a contour length of 57 μm) and Tris-hydrochloride acid buffer (ph7.5) were purchased from Nippon Gene (Tokyo, Japan). The dimeric cyanine fluorescent dye YOYO-1 (1,10-(4,4,8,8-tetramethyl-4,8-diazaundecamethylene)bis[4-[(3-methylbenzo-1,3-oxazol-2-yl)methylidene]-l,4-dihydroquinolinium] tetraiodide) was obtained from Molecular Probes Inc. (OR, USA).
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2

Polyamine Synthesis Reagents

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Agmatine and cadaverine were purchased from Tokyo Chemical Industry (Tokyo, Japan). N-carbamoylputrescine was synthesized by Life Chemical (Kiev, Ukraine). The chemicals 1,4-butanediammonium dichloride and L(+)-arginine hydrochloride were purchased from Fujifilm Wako Pure Chemical (Osaka, Japan). Spermidine trihydrochloride and spermine tetrahydrochloride were purchased from Nacalai Tesque (Kyoto, Japan). All other reagents were of analytical grade.
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3

DNA-binding Interactions with Fluorescent Probes

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Spermidine trihydrochloride (SPD) was purchased from Nacalai Tesque (Kyoto, Japan). Bis(3-aminopropyl)amine (NSPD) was purchased from Sigma-Aldrich (St. Louis, MO, USA). The fluorescent cyanine dye YOYO-1 (1,10-(4,4,8,8-tetramethyl-4,8-diazaundecamethylene)bis[4-[(3-methylbenzo-1,3-oxazol-2-yl)methylidene]-l,4-dihydroquinolinium] tetraiodide) was purchased from Molecular Probes, Inc. (Eugene, OR, USA). The antioxidant 2-mercaptoethanol (2-ME) and calf thymus DNA (CT DNA: 8–15 kbp) were purchased from Wako Pure Chemical Industries (Osaka, Japan). T4 GT7 phage DNA (contour length: 57 μm, 166 kbp) was purchased from Nippon Gene (Toyama, Japan). Plasmid DNA (Luciferase T7 Control DNA, 4331 bp) containing a T7 RNA polymerase promotor sequence was purchased from Promega (Madison, WI, USA). Other chemicals obtained from commercial sources were of analytical grade.
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