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5 protocols using anti detyrosinated α tubulin

1

Immunolabeling of Cytoskeletal Proteins

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The following primary antibodies were used: anti-α-actinin 4 (mouse, sc-393495; Santa Cruz Biotechnology [SCBT]), anti-α-actinin 1 (rabbit, ab68194; Abcam), anti-α-actinin 4 (mouse, sc-390205; SCBT), anti-α-tubulin (mouse, T5168; Sigma), anti-α-tubulin (rat, sc-53029; SCBT), anti-acetylated α-tubulin (mouse, T6793; Sigma), anti-detyrosinated α-tubulin (rabbit, 48389; Abcam), ActiStain-488 (PHDG1; Cytoskeleton), ActiStain-555 (PHDH1-A; Cytoskeleton), anti-heat shock protein 70 (HSP70) (chicken, SPC-178D; StressMarq), anti-IncA (rabbit; T. Hackstadt), and anti-MOMP (goat, 1621; ViroStat). The following secondary reagents were used: Hoechst dye (H1399), and goat and donkey anti-mouse, anti-goat, and anti-rabbit Alexa Fluor 488-, 555-, or 647-conjugated secondary antibodies (Invitrogen, Jackson ImmunoResearch). Donkey anti-chicken (IgY), anti-mouse, or anti-rabbit IgG horseradish peroxidase (HRP)-conjugated secondary antibodies were purchased from Invitrogen.
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2

Comprehensive Antibody Panel for Cell Analysis

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The following primary antibodies were used: anti-HA (chicken, A190-106A; Bethyl Laboratories), anti-actin (rabbit, A2066; Sigma), anti-myc (mouse, 9E10 clone; Juan Bonifacino, NIH), anti-myc (rabbit, 2278; Cell Signaling), anti-RhoA (mouse, ARH04; Cytoskeleton), anti-RhoA (mouse, SAB1400017; Sigma), anti-FLAG (mouse, F1804; Sigma), anti-FLAG (rabbit, 600-401-383; Rockland Immunochemical), anti-ARF1 (mouse, sc-53168; SCBT), anti-α-tubulin (mouse, T5168; Sigma), anti-acetylated α-tubulin (mouse, T6793; Sigma), anti-detyrosinated α-tubulin (rabbit, 48389; Abcam), ActiStain-488 (PHDG1; Cytoskeleton), Actistain-555 (PHDH1-A; Cytoskeleton), anti-heat shock protein 70 (HSP70) (chicken, SPC-178D; StressMarq), anti-InaC (mouse; T. Hackstadt), anti-IncA (rabbit; T. Hackstadt), and anti-MOMP (goat, 1621; ViroStat). The following secondary reagents were used: Hoechst dye (H1399) and goat and donkey anti-mouse, anti-goat, anti-rabbit, and anti-chicken (IgY) IgG Alexa Fluor 488-, 555-, or 647-conjugated secondary antibodies (Invitrogen). Donkey anti-chicken, anti-mouse, or anti-rabbit IgG and IgY horseradish peroxidase (HRP)-conjugated secondary antibodies were purchased from Invitrogen.
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3

Immunofluorescence Staining for Acetylated and Detyrosinated Tubulin

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Cells were grown on glass coverslips and then fixed in 100% cold methanol (10 min, 4 °C). Immunofluorescence staining was performed as previously described [10 (link)] with the following antibodies: Anti-acetyl-α-tubulin (Lys40) (D20G3) XP Rabbit mAb (1:1000; Cell Signaling), Anti-detyrosinated-α-tubulin (1:1000; Abcam), Monoclonal Anti-detyrosinated- α-tubulin (1:10,000: RevMAb), Monoclonal Anti-α-tubulin Clone DM1A (1:5000; Sigma Aldrich) and β-actin (1:2000; AC-15, Sigma). Anti-IgG antibodies conjugated to Alexa-488 (1:1000; Molecular Probes) were used for secondary detection and Hoescht 33342 (1:5000; Sigma) was used for nuclear staining. Images were acquired using an Olympus FV1000 laser scanning confocal microscope (Olympus, Center Valley, PA). The deTyr-Tubulin antibody (RevMab) was developed by Takashi Hotta and Ryoma Ohi [23 (link)] and is now commercially available through RevMab under catalogue number RM444 (https://www.revmab.com/index.php/product/anti-detyrosinated-alpha-tubulin-rabbit-monoclonal-antibody-clone-rm444/).
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4

Immunoblot Analysis of Apoptosis Markers

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Subconfluent MDA-MB-231 TD, MDA-MB-436 TD, BT-549 TD cells were treated with either Vinorelbine, vehicle control, or Staurosporine. All cells, any suspended and attached, were harvested, lysed with a RIPA lysis buffer, and analyzed by immunoblot as previously described [24 (link)] with the following antibodies: Anti-Poly (ADP-ribose) polymerase (PARP; 1:1000, SCBT), Anti-acetyl-α-tubulin (Lys40) (D20G3) XP Rabbit mAb (1:1000; Cell Signaling), Anti-detyrosinated- α-tubulin Monoclonal (1:10,000: RevMAb) or Anti-detyrosinated-α-tubulin (1:1000; Abcam), Monoclonal Anti-α-tubulin Clone DM1A (1:2000; Sigma Aldrich) and β-actin (1:5000; AC-15, Sigma).
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5

Profiling Microtubule Modifications in Heart Tissue

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Protein lysates from heart tissues were loaded on and separated by a 12% SDS-PAGE and then transferred to PVDF membranes (EMD Millipore, MA, USA). The membranes were probed overnight with primary antibodies at 4°C. The primary antibodies were anti-detyrosinated α-tubulin (Abcam, Cambridge, CB, UK), anti-acetylated α-tubulin (Abcam, Cambridge, CB, UK), anti-α-tubulin (Abcam, Cambridge, CB, UK), anti-tubulin tyrosine ligase (Proteintech, Rosemont, IL, USA), anti-HDAC6 (Abcam, Cambridge, CB, UK), and anti-GAPDH (Abcam, Cambridge, CB, UK). Membranes were incubated with appropriate secondary antibodies for 2 h at room temperature. Membranes were imaged using Odyssey infrared fluorescence imager (LI-COR, Lincoln, NE, USA). Some of the signals were detected using Immobilon Western Chemiluminescent HRP Substrate (EMD Millipore, MA, USA).
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