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9 protocols using animal tissue total rna extraction kit

1

Cytokine mRNA Expression Analysis

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IL-1β, IL-6, IL-10 and TNF-α mRNA were detected using a RT-PCR kit (MJ-RESEARCH, United States) according to the manufacturer’s instructions. Total RNA was extracted from pouch tissues using an animal tissue total RNA Extraction Kit (Tiangen, Beijing, China). The primer pairs are shown in Table 1.
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2

Rat Myocardial RNA Extraction and RT-qPCR Analysis

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Total RNA was extracted from rat myocardial tissue using Animal Tissue Total RNA Extraction Kit (Tiangen, Beijing, China). RT-qPCR was performed using Quant One Step RT-qPCR Kit (SYBR Green) (Tiangen, Beijing, China). SYBR Green Master Mix (Thermo Fisher) is used in ABI Prism 7000 Systems (Applied Biosystems, USA). The thermocycling conditions were as follows: A holding step at 95°C for 30 sec, and 40 cycles at 95°C for 5 sec and 60°C for 30 sec. The primers used for miRNA detection by RT-qPCR were designed based on sequences provided by the Sanger Center miRNA Registry. The U6 was used as an endogenous control for miR-148 expression levels. All primers of mRNA were designed as follows: PDK4 forward 5’-AACACCAGGAAAATCAGCC-3’, reverse 5’-AAAACCAGCCAAAGGAGC-3’; GAPDH forward 5’-ACCCAGAAGACTGTGGATGG-3’, reverse 5’-TCTAGACGGCAGGTCAGGTC-3’. The result was normalized to GAPDH and calculated with the 2−ΔΔCt [21 (link)].
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3

Total RNA Extraction and cDNA Synthesis

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Total RNA was extracted using an animal tissue total RNA extraction kit (TIANGEN, Beijing, China) following manufacturer’s instructions. RNA concentration and purity were determined using the Nanodrop 2000C spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA). RNA integrity was confirmed using 1% agarose gel electrophoresis. Extracted total RNA was transcribed using the PrimerScript RT kit (Takara, Japan) according to manufacturer’s instructions. cDNA was then stored at −20°C.
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4

Animal Tissue RNA Extraction and cDNA Synthesis

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Tissue RNA was extracted with the Animal Tissue Total RNA Extraction Kit (TIANGEN, DP431, CHINA). A 1μg total RNA was reversed transcribed into cDNA using the Fast Quant cDNA First-Strand Synthesis Kit (TIANGEN, KR106). RNA extraction and reverse transcription were performed according to the instructions.
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5

Quantifying Thrombosis-Related Gene Expression

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Total RNAs were extracted from the thrombus using an Animal Tissue Total RNA Extraction kit (Tiangen Biotech Co., Ltd.). Subsequently, RNA was reverse transcribed into cDNA with TIANScript II RT Kit (Tiangen Biotech Co., Ltd.). The temperature protocol was as follows: 65˚C for 5 min, 42˚C for 60 min, 85˚C for 5 min, and 4˚C for 10 min. qPCR assays were performed using a SuperReal PreMix Plus (SYBR Green; Tiangen Biotech Co., Ltd.) to determine the mRNA levels of IL-1β, TF, XOD and NF-κB. The primer sequences used are listed in Table I. GAPDH was used as an internal reference gene. The primers were synthesized by Sangon Biotech Co., Ltd. The qPCR thermocycling conditions were 95˚C for 1 min followed by 40 cycles of 95˚C for 10 sec and 60˚C for 34 sec, and a final extension at 60˚C for 1 min. The comparative 2-ΔΔCq method was used for relative quantification (19 (link)).
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6

Wulong Goose Ovary RNA Extraction

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We used the Animal Tissue Total RNA extraction kit from TianGen Biotech Co., Ltd. to extract total RNA from Wulong geese ovaries. The RNA was reverse transcribed using the Prime Script™ RT reagent Kit from TaKaRa Biosciences. The reverse transcription system is described in Supplementary Table 2. The primer sequences (Supplementary Table 3) were designed using Primer 5.0 software and synthesized by Shanghai Sangon Biological Engineering Technology & Services Co., Ltd. qRT-PCR was performed on a CFX96 real-time system (Bio-Rad, Hercules, CA, USA); the reaction system and conditions are shown in Supplementary Tables 4 and 5. Three biological replicates and three technical replicates were used for each sample. The relative expression levels of each gene were calculated using the 2−ΔΔCt method, with GAPDH as the reference gene. Gene expression bar charts were plotted using GraphPad Prism 7. Independent sample t-tests were performed using SPSS 26.0 statistical software.
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7

Muscle Tissue Total RNA Extraction

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For the purpose of isolating total RNA from muscle tissues, we used an animal tissue total RNA extraction kit (Tiangen, Beijing, China) and following the instructions supplied by the vendor. We used a NanoDrop 8000 spectrophotometer (NanoDrop, Waltham, MA) to measure the RNA concentration and employed agarose gel electrophoresis to measure its purity. The RNA integrity was assessed using a 2100 bioanalyzer from Agilent Technologies, located in Santa Clara, CA. Shenzhen Huada Genome Co., Ltd. (located in Shenzhen, China) conducted high-throughput RNA sequencing and deep sequencing procedures.
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8

Intestine Total RNA Extraction and qRT-PCR

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Total RNA was extracted from intestine tissues using an Animal Tissue Total RNA Extraction Kit (TIANGEN, Beijing, China). Complementary DNA was synthesized from total RNA using poly (A)-tailed total RNA and reverse transcription primers with ImPro-II Reverse Transcriptase (Promega, Madison, WI, USA) according to the manufacturer’s protocol. qRT‒PCR was performed according to the instructions of Fast Start Universal SYBR Green Master Mix (Rox) (Roche Diagnostics GmbH, Mannheim, Germany). Relative transcriptional folds were calculated as 2−ΔΔCt. GAPDH was used as an internal control for normalization. The primers are listed in Supplementary Table 2.
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9

Quantification of IGF-1 and Fat-1 Expression

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We extracted total RNA of tissues from spleen, heart, kidney, lung, liver and muscle of Fat-1 and IGF-1 knock-in piglets by Animal Tissue Total RNA Extraction Kit (TIANGEN, Beijing, China). 1ug of total RNA from each tissue was converted into cDNA by using the FastKing one-step RT-PCR kit (TIANGEN, Beijing, China). The cDNA from each tissue was used as template of real-time fluorescence quantitative PCR to quantify the expression of the IGF-1 and Fat-1 genes at the transcription level. Porcine GAPDH was selected as reference gene for real-time PCR, and the primers for IGF-1, Fat-1 and GAPDH were as following: Fat-1 forward strand, 5′-ACCACATCGACAAGGACCAC-3′ and reverse strand 5′-TGATGACGCACTGCACTCTT-3′; IGF-1 forward strand 5′-TGCTTGCTCTCCTTCACCAG-3′ and reverse strand 5′-TCCAGCCTCCTCAGATCACA-3′; and GAPDH forward strand 5′-GCCATCACCATCTTCCAGG-3′ and reverse strand 5′-TCACGCCCATCACAAACAT-3′. The real-time PCR was performed on Bio-Rad IQ5 instrument.
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