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2 protocols using apoptosis inducing factor

1

Western Blot Analysis of Cardiac Proteins

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Briefly, heart tissues were homogenized with RIPA lysis buffer (Santa Cruz Biotechnology, CA). Total proteins were extracted and separated on SDS-PAGE gels, and then proteins were transferred to a nitrocellulose membrane (Bio-Rad, Hercules, CA). The membrane was blocked with 5% nonfat dried milk for 1 h and then incubated overnight at 4°C with the following primary antibodies: intercellular adhesion molecule 1 (ICAM-1, Santa Cruz Biotechnology, CA), tumor necrosis factor alpha (TNF-α, Abcam, Cambridge, MA), plasminogen activator inhibitor-1 (PAI-1, BD Bioscience, Sparks, MD), 3-nitrotyrosine (3-NT, Millipore, Billerica, MA), 4-hydroxy-2-nonenal (4-HNE, Alpha Diagnostic International, San Antonio, TX), B-cell lymphoma 2 (BCL-2) and BCL2-associated X protein (BAX) (Cell Signaling, MA), cleaved-caspase-8 (Cell Signaling, MA), apoptosis inducing factor (AIF) (Cell Signaling, MA), caspase-12 (Exalpha Biologicals, MA), C/EBP homologous protein (CHOP; Santa Cruz Biotechnology, CA) GAPDH (Santa Cruz Biotechnology, CA), and cleaved-caspase-3 (Cell Signaling, MA). After three washes with Tris-buffered saline (pH 7.2) containing 0.1% Tween 20 (TBST), membranes were incubated with appropriate secondary antibodies for 1 h at room temperature. Antigen-antibody complexes were then visualized using an enhanced chemiluminescence kit (Thermo Scientific, Rockford, IL) [22 (link)].
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2

Mitochondrial Dynamics and Apoptosis Signaling

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Liver tissues or cells were lysed in RIPA buffer. Lysates were centrifuged (14,000 x g for 10 min) and the supernatant was collected. The proteins were size-separated by 10% SDS-PAGE, transferred to PVDF membranes, and blocked with 5% non-fat dry milk before being incubated with primary antibodies: mitofusin-1 (MFN1) (Proteintech, Chicago, IL), dynamic-related protein-1 (DRP1) (Proteintech), fission-1 (FIS1) (Santa Cruz Biotechnology, Santa Cruz, CA), apoptosis signal-regulating kinase 1 (ASK1) (Cell Signaling Technology, Danvers, MA), phosphorated-c-Jun N-terminal Kinase (p-JNK) (Cell Signaling Technology), phosphorated-c-Jun (p-c-Jun) (Cell Signaling Technology), apoptosis protease activating factor-1 (Apaf-1) (Proteintech), cytochrome c (Cyt c) (Cell Signaling Technology), caspase 3 (Cell Signaling Technology), cleaved caspase 3 (Cell Signaling Technology), PARP (Cell Signaling Technology), cleaved PARP (Cell Signaling Technology), apoptosis-inducing factor (AIF) (Cell Signaling Technology), and endonuclease G (EndoG) (Cell Signaling Technology). Secondary antibodies were anti-mouse IgG and anti-rabbit IgG (1:5000 dilutions, Cell Signaling Technology). The membrane was visualized using the ECL-Plus chemiluminescence reagent (GE Healthcare, Buckinghamshire, UK).
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