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4 protocols using anti cd99

1

Western Blotting Procedure for Protein Analysis

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Western blotting was conducted as previously described [17 (link)] using anti-HIF-1α (1:1000; Cell Signaling Technology, Danvers, MA, United States), anti-cyclin E1 (1:1000; Abcam, Cambridge, United Kingdom), anti-cyclin A2 (1:1000; Abcam), anti-CDK2 (1:1000; Abcam), anti-p21 (1:1000; Abcam), anti-CD99 (1:1000; Abcam), anti-ERK1+ERK2 (1:5000; Abcam), anti-ERK1 (phospho T202)+ERK2 (phospho T185) (1:1000; Abcam) and anti-GAPDH (1:1000; Sangon Biotech Corp., Shanghai, China) primary antibodies. The membranes were then incubated with secondary anti-rabbit antibodies conjugated to horseradish peroxidase (1:4,000; Abcam). Proteins were detected using PierceTM enhanced chemiluminescence (ECL) western blot analysis substrate (Thermo Fisher Scientific Inc.) and analyzed with ImageJ software (NIH, Bethesda, MD, United States).
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2

Immunofluorescence Staining of CD99 and ERK

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Cells were grown on plates to about 70% confluence. After washing with PBS, the cells were fixed in 4% paraformaldehyde for 30 min in darkness and permeabilized with 0.3% Triton X-100 (Sangon Biotech Corp.) in PBS. Next, cells were blocked with 5% BSA and incubated with anti-CD99 (1:100; Abcam) and anti-ERK1 (phospho T202) +ERK2 (phospho T185) (1:100; Abcam) antibodies at 4 °C overnight. Goat anti-rabbit immunoglobulin G (Alexa Fluor® 647, 1:200; Abcam) was incubated with the fixed cells at room temperature for 1 h and protected from light. 4′,6-Diamidino-2-phenylindole was used to counterstain nuclei. Stained slides were observed with a Zeiss LSM710 confocal laser-scanning microscope (Carl Zeiss AG, Germany).
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Western Blot Analysis of Immune Proteins

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Guanidine whole-cell lysates were precipitated using a ProteoExtract protein precipitation kit (Calbiochem). Proteins were re-dissolved in 2% SDS/Tris 200 mM pH8.5 with sonication. Protein concentration was measured by BCA (Pierce) then lysates were reduced with 100 mM DTT in loading buffer for 20 min at 65°C. Equal protein amounts were separated by SDS/PAGE using 4%–12% Bis-Tris polyacrylamide gels (Life Technologies), then transferred to PVDF membranes using the iBlot transfer system (Life Technologies). The following primary antibodies were used: anti-IFIT1 (clone 3G8, Lifespan), anti-IFIT3 (cat no. GTX112442, GeneTex), anti-MX1 (clone 2G12, GeneTex), anti-Calnexin (cat no. C142768, Lifespan), anti-MHC class I (clone HC-10, Abcam), anti-CD99 (cat no. ab108297, Abcam), anti-CLEC1A (cat no. AF1704, R and D systems), anti-FAT1 (cat no. HPA023882, Sigma), anti-PCDHGC3 (cat no. sc-134416, Santa Cruz), anti-IRF3 (clone FL-425, Santa Cruz), anti-NF-kB p50/105 (cat no. sc-7178, Santa Cruz), anti-p65/RELA (cat no. sc-109, Santa Cruz), anti-Pan-Akt (clone C67E7, Cell Signaling), anti-actin (cat no. A2066, Sigma). HRP-conjugated secondary antibodies were anti-rabbit (Cell Signaling), anti-mouse (Santa Cruz) or anti-goat (Santa Cruz). Reactive bands were detected by SuperSignal West Pico substrate (Thermo).
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4

Immunoblotting Analysis of Cell Signaling Proteins

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Preparation of cellular lysates and subsequent immunoblotting were performed as previously described.54 (link) The antibodies used for the immunoblotting are anti-CD99 (Abcam, # ab75858, EPR3097Y), anti-PARP (Cell Signaling Technology, #9542), anti-Caspase 3 (Cell Signaling Technology (CST), #9662), anti-H2A.X (CST, #7631, D17A3), anti-γH2A.X (CST, #9718, Ser139 - 20E3), anti-ACTIN-HRP (Abcam, #ab49900, AC-15), anti-Rabbit IgG-HRP (Cytiva, # NA934), and anti-Mouse IgG-HRP (Cytiva, # NA9311). Enhanced chemiluminescence (ECL) signal on PVDF membranes was captured by using LI-COR Odyssey XF imaging system (LI-COR Biosciences) and densitometry analysis of the protein bands were performed by using Image Studio software (LI-COR Biosciences).
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