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2 protocols using sigirr

1

Western Blot Analysis of Cell Signaling

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Whole cell lysates were prepared in a lysis buffer containing Tris-HCl (25 mM, pH 7.4), sodium dodecyl sulfate (SDS, 0.1%), Igepal (1%), ethylene diamine tetra acetic acid (2 mM), phenyl methyl sulfonyl fluoride (1 mM), sodium orthovanadate (0.2 mM), NaF (50 mM), NaCl (150 mM), leupeptin (1 μg/ml), and pepstatin (1 μg/ml). Approximately 25 μg of protein was fractionated on SDS-PAGE gels and the separated proteins were electro-transferred onto nitrocellulose membranes. After blocking non-specific sites with 5% skimmed milk in 0.4% Tween-20 in Tris-buffered saline (TBST), the membranes were incubated overnight at 4 °C with primary antibodies in TBST. The dilutions of primary antibodies against Phospho-SP1 (Abcam), SP1 (Abcam), SIGIRR (Santa Cruz Biotech) and mouse ST2 (Abcam) were made as recommended by the manufacturers. Afterwards, the membranes were washed and incubated with HRP-conjugated-anti-rabbit-IgG antibody (1:5,000 in TBST) for 2 h at room temperature. Protein bands were identified by SuperSignal West Femto detection reagent (Thermo Fisher Scientific, Rockford, IL). The membranes were also re-probed with anti-actin antibody (Sigma; 1:5,000 in TBST) after stripping them in a solution containing SDS (10%), Tris (0.5 M), and β-mercaptoethanol (35 μl/ml) at 60 °C for 45 min. The densitometric readings for immunoreactive protein bands were normalized with those for actin.
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2

Western Blot Analysis of Protein Expression

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Cells were lysed in RIPA buffer supplemented with protease and phosphatase inhibitors. Protein samples were loaded on SDS-PAGE electrophoresis gel and then transferred to a nitrocellulose membrane with a dry system Trans-Blot Turbo Transfer system (Bio-Rad). The membranes were incubated overnight at 4°C with the appropriate antibody diluted at the optimal concentration in 5% (w/v) skimmed milk or BSA. Antibodies used for Western blot analysis were as follows: anti-FLAG M2 (cat. 05-826 mouse 1:1000 Millipore, Burlington, MA, USA), NFKBIZ (cat. 9244, rabbit, 1:1,000 Cell Signaling Technology), SIGIRR (Santa Cruz, cat. 271864 (A-4), mouse, 1:200, Dallas, TX, USA), and anti-β-actin HRP-conjugated (a3854 Merck Millipore 1:20,000). The blots were then washed in PBS with Tween 0.2% (PBST) and incubated with an appropriate secondary antibody HRP conjugated for 1 h at room temperature. The proteins were visualized using Clarity Western ECL Substrate (cat 1705060 Bio-Rad) and detected by ChemiDoc Imaging System (Bio-Rad). Densitometric analysis of protein bands from Western blot was performed with Image Lab Software 6.1 (Bio-Rad).
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