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24 protocols using hrp secondary antibody

1

Histological and Immunohistochemical Analyses

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Sections were deparaffinized, and stained with 0.1% Luxol fast blue, 0.1% Cresyl violet or hematoxylin-eosin. Immunohistochemistry was performed with primary dilution of 1:200 antibody (Calbindin ABCAM ab11426, Neurofilament Pierce MIC-N18) and visualized with secondary HRP antibody (Jackson Labs). Control tissue corresponds to biobank identification number BB-0033-00082. Oligosaccharide and glycosaminoglycan measurements were performed as described4 .
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2

Histological and Immunohistochemical Analyses

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Sections were deparaffinized, and stained with 0.1% Luxol fast blue, 0.1% Cresyl violet or hematoxylin-eosin. Immunohistochemistry was performed with primary dilution of 1:200 antibody (Calbindin ABCAM ab11426, Neurofilament Pierce MIC-N18) and visualized with secondary HRP antibody (Jackson Labs). Control tissue corresponds to biobank identification number BB-0033-00082. Oligosaccharide and glycosaminoglycan measurements were performed as described4 .
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3

Immunofluorescence Staining of Meiotic Proteins

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The following commercial antibodies were used: goat anti-DMC1 (sc-8973, C-20), goat anti-ATR (sc-1887, N19), mouse anti-SYCP3 (sc-74569, d-1), rat anti-GATA1 (sc-265) antibodies from Santa Cruz. Rabbit anti-H3K4me3 (07–473), from Millipore, rabbit anti-SYCP3 (ab15093) from Abcam, rabbit anti-γH2AX from Trevigen (4411-PC-100) and goat anti-PLZF (AF2944) from R&D systems. Secondary HRP antibodies were purchased from Jackson Laboratories. Fluorescent secondary Alexa antibodies were purchased from Invitrogen.
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4

Detailed Antibody Labeling and Purification Protocol

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ATN-291 was manufactured by SDIX [12 (link)]. Fluorescein isothiocyanate (FITC)- and Cy3-labeled secondary antibodies used in flow cytometry or histology were purchased from Jackson Immunoresearch Laboratories, Inc. (West Grove, CA). Anti-uPA antibody, anti-uPAR antibody and anti-β-actin antibody (conjugated with horseradish peroxidase [HRP]) used in Western blotting were both purchased from Abcam (Cambridge, MA, USA). Secondary HRP antibodies were purchased from Jackson ImmunoResearch (St. Louis, MO, USA). p-SCN-Bn-Df (i.e. p-isothiocyanatobenzyl-desferrioxamine B) was acquired from Macrocyclics, Inc. (Cat #: B-705, Dallas, TX). Chelex 100 resin (50 – 100 mesh) was purchased from Sigma-Aldrich (St. Louis, MO). Buffers used in this study were prepared from Millipore-grade water and pre-treated with Chelex 100 resin to ensure that the aqueous solution was free of heavy metals. Size exclusion PD-10 columns were purchased from GE Healthcare (Piscataway, NJ). All other chemicals were purchased from Thermo Fisher Scientific (Fair Lawn, NJ).
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5

Western Blot Analysis of Signaling Pathways

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Cells were seeded in 10 cm dishes 24 hours prior to treatment and incubated with indicated compounds for 1 hour. Cells were washed with phosphate-buffered saline (PBS) and lysed with NP-40 lysis buffer (1% NP40, 150 mM NaCl, and 25 mM Tris, pH 8.0) supplemented with protease inhibitors (Complete Protease Inhibitor Cocktail, Roche) and phosphatase inhibitors (PhosSTOP, Roche). Concentration of protein was determined using Lowry assays (Bio-Rad, Hercules, CA) and equal amount of whole cell protein lysate was loaded in each lane and resolved using 4-12% gradient Bis-Tris gel (Invitrogen, CA). Proteins were transferred to 0.2-0.45μm nitrocellulose membrane (Invitrogen, CA). Membranes were incubated overnight at 4 °C with primary antibodies after blocking, followed by incubation with appropriate HRP-conjugated secondary antibody at room temperature for one hour. ECL-Plus was used to detect the activity of peroxidase according to the manufacturer's protocol (Amersham Pharmacia, Uppsala, Sweden). Antibodies raised against phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204), pAKT(S473), phospho-p70 S6K and total ERK, AKT antibodies were purchased from Cell Signaling Technology (Beverly MA, USA), and anti-beta actin (conjugated with HRP) was purchased from Abcam (Cambridge, MA, USA). Secondary HRP antibodies were purchased from Jackson ImmunoResearch (St. Louis MO, USA).
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6

Radiolabeled Antibody Conjugate Synthesis

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Zirconium chloride (ZrCl4), terephthalic acid (BDC), benzoic acid (BA), 1-pyrenemethylamine hydrochloride, triethylamine (TEA), poly(γ-glutamic acid) (γ-PGA), 1-ethyl-3-(3-(dimethylamino)-propyl) carbodiimide hydrochloride (EDC·HCl), and 37% HCl were all purchased from Sigma-Aldrich (St Louis, MO). 89Zr-oxolate (in 1 M oxalic acid) was acquired from University of Wisconsin Cyclotron group. Doxorubicin hydrochloride and tris(2-carboxyethyl)phosphine hydrochloride (TCEP·HCl) were ordered from Thermo Fisher Scientific (Fair Lawn, NJ). Amine-PEG-Mal (i.e., amine PEG maleimide, MW: 5 kDa) was purchased from Creative PEGworks (Chapel Hill, NC). Antinucleolin antibody and anti-β-actin antibody (conjugated with horseradish peroxidase [HRP] for Western blotting) were both purchased from Abcam (Cambridge, MA, USA). Secondary HRP antibodies were purchased from Jackson ImmunoResearch (St. Louis MO, USA). Chelex 100 resin (50–100 mesh) was purchased from Sigma-Aldrich. Buffers used in this study were prepared from Millipore-grade water and pretreated with Chelex 100 resin to ensure that the aqueous solution was free of heavy metals. Size exclusive PD-10 columns were purchased from GE Healthcare (Piscataway, NJ). All other chemicals were purchased from Thermo Fisher Scientific.
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7

Splenic DC Activation Signaling Assay

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Enriched splenic DCs were cultured in 96- or 24-well plates with purified flagellin (1 μg/mL or 10 ng/mL) and lysed at various time points with RIPA buffer (Sigma) containing protease inhibitors (Sigma). Whole-cell extracts were centrifuged, loaded onto 4–15% Tris/glycine gels (Bio-Rad, USA), and transferred to polyvinylidene fluoride or nitrocellulose membranes (PVDF)(GE Healthcare, Pittsburgh, PA, and Invitrogen). All antibodies (anti-phospho PKC-delta, anti-caspase-1, anti-β-actin, anti–TEK, and anti-phospho-IRS-1) were added at 1:1000 dilution, followed by HRP secondary antibodies (Jackson Immuno Research, West Grove, PA). ECL plus (GE Healthcare) was used as substrate and blots examined using a Kodak Image Station.
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8

Nicotinamide and ROCK Inhibitor Effects on Cardiomyocyte Protein

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Cardiomyocytes were dissociated by TrypLE around day 10, and different doses of nicotinamide or ROCK inhibitor Y27632 10 μM were added in the medium for 1 h. The protein was harvested after 1 h for western blot [22 ]. Briefly, 40 μg protein of each sample was separated by electrophoresis with SDS-PAGE gels, and then transferred to PVDF membranes. The membranes were first blocked with 5% non-fat milk, and then incubated with antibodies against p-MLC (Ser19) 1:500 (Cell Signaling, 3671), MLC 1:1000 (Sigma, M4401), or Actin 1:2000 (Santa Cruz, sc-47778) overnight at 4 °C. After washing, the membranes were incubated with HRP-secondary antibodies (Jackson, 115-035-146 or 111-035-144) for 2 h at room temperature. Chemiluminescence was detected using SuperSignalTM West Pico PLUS Chemiluminescent Substrate (Thermo) or West Dura Extended Duration Substrate (Thermo).
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9

Western Blot Analysis of Autophagy and Signaling Proteins

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Cells cultured in 6-well plates were solubilized in mRIPA buffer (50 mM Tris, pH 8, 200 mM NaCl, 0.5% NaDOC, 0.05% SDS, 1% NP-40, 2 mM EDTA) together with protease inhibitor cocktail (Roche, 11,873,580,001), 2 mM NaF and 1 mM Na3VO4. Total lysates were boiled 5 min at 95°C with 5x Laemmli buffer (0.156 M Tris, pH 6.8, 5% SDS, 25% glycerol, 5% β-mercaptoethanol) and resolved by 10% or 15% SDS-PAGE. Then transferred onto 0.45-µm nitrocellulose membranes (GE Healthcare, 10,600,016) and incubated with Blocking buffer (Thermo Scientific, 37,538), diluted with TBS (50 mM Tris, pH 7.5, 150 mM NaCl) in a 1:1 ratio. Subsequently, membranes were incubated with antibodies to SQSTM1 (1:2000), LC3A/B (1:1000), ACTA1 (1:4000), ATG5 (1:1000), HMOX1 (1:1000), p-MAPK/ERK and p-MAPK/p38 (1:1000), MAPK/ERK and MAPK/p38 (1:2000), NFKBIA (1:1000), and ubiquitin (1:2000) diluted in Blocking buffer-TBS containing 0.1% Tween 20 (Sigma, P7949; TBS-T). After washing in TBS-T, chemiluminescent detection was performed using HRP secondary antibodies (1:10,000; Jackson ImmunoResearch, 111–035-144, 115–035-146) and a chemiluminescent substrate kit (Thermo Scientific, 34,078). Densitometric analysis of western blot results was performed using ImageJ.
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10

Immunoprecipitation and Western Blotting Protocol

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For immunoprecipitation, lysates were incubated with ERK5 (2 μg/ml, #AF2848, R&D systems) or control IgG (2 μg/ml, goat) and protein G agarose. Lysates were separated by SDS–PAGE on 8% Tris‐glycine gels (8% [w/v] acrylamide, 0.4 M Tris–HCl pH 8.8 0.08% [w/v] SDS, 6.2% [v/v] glycerol 0.05% [v/v] temed, and 0.02% [w/v] APS). Gels were resolved for 90 min at 35 mA and transferred to 0.2 μm nitrocellulose membrane (Hybind‐C, GE Healthcare, Amersham, UK) for 2 hr at 125 mA. Membranes were blocked in 5% (w/v) bovine serum albumin (BSA) diluted in Tris‐buffered saline (TBS) with 0.1% (v/v) Tween‐20 (TBST) and probed with primary antibodies, directed against: ERK5 (#3372), phospho ERK1/2 (#4370), GAPDH (#5174), phospho ERK5 (T218/Y220) (#3371), ERK1/2 (#4695) were purchased from New England Biolabs (Hitchin, UK). Antibodies to RAP1 (SC‐65) and unprenylated RAP1A (SC‐1482) were purchased from Santa Cruz Biotechnology. Antibodies to MEKK2 (ab33918), MEKK3 (ab40750), and MEK5 (ab45146) were purchased from Abcam (Cambridge, UK). Antibody to ZO‐1 (40‐2200) was purchased from Invitrogen (Thermo Fisher Scientific). All antibodies were diluted in 1% (w/v) BSA and incubated overnight at 4°C. Proteins were detected using rabbit‐ or goat‐specific HRP secondary antibodies (Jackson Immunoresearch Labs) and enhanced‐chemiluminescence (ECL) Western blotting detection reagent (Pierce).
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