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Glycerol

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Glycerol is a colorless, odorless, and viscous liquid used in various laboratory applications. It is a basic chemical compound with the molecular formula C₃H₈O₃. Glycerol is commonly used as a solvent, humectant, and stabilizer in many laboratory procedures.

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1 988 protocols using glycerol

1

Nanodiamond-Glycerol Suspension and Xanthan Crosslinking

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To make a suspension of
nanodiamonds in glycerol, 100 μL of 1 mg mL–1 50 nm carboxylic-acid terminated nanodiamonds (FND Biotech, Taiwan)
in water were centrifuged for 5 min at 12 000 g. Details on the nanodiamond fabrication and material properties
can be found in ref (59 (link)). Excess water was removed, and the nanodiamond pellet was resuspended
in 10 mL of ≥99% glycerol (Sigma-Aldrich, UK).
To make
the glycerol-cross-linked xanthan (GCX), we transfer 9.9 g of glycerol-nanodiamond
suspension prepared as mentioned above into a beaker and begin agitating
by using a magnetic stirrer at a rate of 100 rpm. Then 0.1 g of xanthan
gum powder (Sigma-Aldrich, UK) is slowly added to the glycerol. Once
all the xanthan is fully incorporated into the glycerol, the beaker
is heated to 80 °C with the stirring rate increased to 1000 rpm
for 1 h to facilitate cross-linking.
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2

Mycobacterium tuberculosis H37Rv Culture

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Mtb H37Rv was grown in Category III conditions on Middlebrook 7H9 (Becton Dickinson) medium plus 10% Middlebrook OADC (oleic acid, albumin, dextrose and catalase; Becton Dickinson) supplement, 0.5% glycerol (Sigma Aldrich) and 0.05% Tween 80 (Sigma Aldrich) at 37 °C at 100 rpm until they reached mid log phase when aliquots were frozen for use in 10% glycerol and plated out for colony forming units (CFU) on Middlebrook 7H10 agar plates plus 10% OADC and 0.5% glycerol at 37 °C for 2–3 weeks.
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3

Rat Model of Rhabdomyolysis and Lithium Treatment

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Male Wistar rats (Rattus novergicus) weighing 180–200 g were obtained from the animal facilities of the University of São Paulo–Institute of Biomedical Sciences. We kept our animals at controlled temperature (23±1°C) with a light/dark cycle of 12/12h in standard cages with ad libitum access to tap water and commercial rodent chow (Nuvilab, PR, Brazil). Rats were allocated to four groups: Sham (C, n = 7), received saline 0.9% (5 mg/kg body weight) intraperitoneally (IP); Lithium (Li, n = 7), received a single IP injection of Lithium Chloride (LiCl, 80 mg/kg body weight, MilliporeSigma, MA, USA); glycerol (Gly, n = 8), received a single dose of glycerol 50% (5 mL/kg body weight, Sigma-Aldrich, MO, USA) intramuscular (IM); and glycerol plus Lithium (Gly+Li, n = 8), received a single dose of glycerol 50% IM plus LiCl IP injected 2 hours after glycerol administration. We submitted the animals to the inhalational anesthetic isoflurane (1mL/1mL; Cristália, SP, Brazil) for approximately 3 minutes before saline or glycerol infusion. The doses and the time between injections of LiCl and glycerol were based on previous studies [14 (link)–16 (link)]. In addition, as the human model of severe rhabdomyolysis requires prompt treatment, we chose to administer lithium 2 hours after the glycerol injection in order to reproduce clinical conditions found in the hospital daily routine.
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4

E. coli BL21 Growth Protocol

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All materials used in this manuscript have been previously described [9] with the exception of D-lactose (Alfa Aesar), glycerol (Sigma), and MILLEX-HV 0.22 μm Filter Unit (MILLIPORE, Carrigtwohil, Co. Cork, Ireland).
Cell Growth: All growths derived from E. coli BL21Star™(DE3) cells (generously provided by the Jewett Laboratory) are acquired from a glycerol stock and streaked onto a LB agar plate less than two weeks old and stored at 4°C. Streak plates were used within two weeks of inoculation.
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5

Electroporation of H. pylori with Plasmid

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H. pylori cells were transformed with plasmids (pHel3-PBP1a-Cmr) by electroporation. Briefly, the H. pylori culture on plates was scraped and suspended with ice-cold ultrapure water. The cells were collected by centrifugation, and the pellet was washed using ice-cold 10% glycerol (Sigma-Aldrich, Saint Louis, Missouri, United States) twice and resuspended with 10% glycerol. Plasmid DNA was mixed with cell suspension. The mixture was poured into a cooled electroporation cuvette (Bio-Rad, Hercules, California), and shocked with a single-pulse electroporation (2.5 kV, 25 mF, 200 Ω). The sample was incubated on serum plate for 24 h at 37°C. Finally, the bacteria were inoculated onto chloramphenicol selective media for 4 days.
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6

Optimized Fermentation Medium Composition

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The composition of the fermentation medium (per liter of water) was modified from Dietz et al.'s as follows: 1.66 g glycerol, 1 g NH4Cl, and 0.5 g NaCl for pH-buffered experiments or 23.50 g glycerol, 2.5 g NH4Cl and 1.0 g NaCl for pH-regulated experiments (Sigma-Aldrich, ≥99 %). In all experiments, 20 mL of a trace element solution (1.5 g/L nitrilotriacetic acid; 3.0 g/L MgSO4·7H2O; 0.50 g/L MnSO4·H2O; 1.0 g/L NaCl; 0.10 g/L FeSO4·7H2O; 0.18 g/L CoSO4·7H2O; 0.10 g/L CaCl2·2H2O; 0.18 g/L ZnSO4·7H2O; 0.01 g/L CuSO4·5H2O; 0.02 g/L KAl(SO4)2·12H2O; 0.01 g/L H3BO3; 0.01 g/L Na2MoO4·2H2O; 0.03 g/L NiCl2·6H2O; 0.30 mg/L Na2SeO3·5H2O; 0.40 mg/L Na2WO4·2H2O) and 150 mM phosphate buffer were added.
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7

Cultivating Mycobacterial Strains in Liquid and Solid Media

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All mycobacterial strains (Supplementary file 2 – Key Reagents) were grown in liquid culture containing Difco Middlebrook 7H9 Broth (BD Biosciences, San Jose, CA) and supplemented with 0.2% (vol/vol) glycerol (Sigma-Aldrich, St. Louis, MO), 0.005% (vol/vol) Tween 80 (Sigma-Aldrich, St. Louis, MO), and 10% (vol/vol) BBL Middlebrook OADC Enrichment (BD Biosciences, San Jose, CA). For M. smegmatis, liquid cultures were incubated at 37°C with orbital shaking at 100 rpm, until the desired growth density was attained – measured by spectrophotometry at a wavelength of 600 nm – before further experimentation. Solid media comprised Difco Middlebrook 7H10 Agar (BD Biosciences, San Jose, CA) supplemented with 0.5% (vol/vol) glycerol (Sigma-Aldrich, St. Louis, MO), and 10% (vol/vol) BBL Middlebrook OADC Enrichment (BD Biosciences, San Jose, CA). Solid media plates were incubated at 37°C for 3–4 days or until colonies had formed.
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8

Yeast Growth in High Osmotic Conditions

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Yeasts were grown on a modified MW in 1 l of a binary solution of water and glycerol with an osmotic pressure of 1.38 MPa (5.1 g of glycerol (Sigma‐Aldrich) per 100 g of distilled water). A pre‐culture was prepared by introducing a single colony [grown at 25°C on a solid MW medium with an osmotic pressure of 1.38 MPa and supplemented with 20 g l‐1 agar (VWR International)] into a 250 ml conical flask containing 100 ml of MW and shaken at 250 r.p.m. (New Brunswick Scientific, C24KC refrigerated benchtop incubator shaker, Edison, NJ, USA) for 48 h at 25°C. Then, cultures were prepared by inoculating 1 ml of the pre‐culture into a 250 ml conical flask containing 100 ml of MW at 1.38 MPa and shaken at 250 rpm for 48 h at 25 °C to reach the stationary growth phase.
A 2.5‐ml aliquot of culture was inoculated into 250 ml conical flask containing 50 ml of MW at the desired osmotic pressure (1.38, 10.5, 16.5, 34.5, 50, 100 or 200 MPa equivalent to, respectively, 0.990, 0.926, 0.887, 0.778, 0.695, 0.483 or 0.234 water activity) and shaken at 250 rpm for 48 h at 25°C. Colony‐forming units (CFU) were counted after 1, 24 and 48 h.
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9

Selective Media for Microbial Isolation

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Chitosan (medium molecular weight 375 kDa, deacetylation 75%), glycerol (≥ 99.5%), D-lactose monohydrate, hydrochloric acid (analytical reagent), cetyltrimethylammonium bromide (CTAB), tetraethylorthosilicate (TeOS), 3-aminopropyltriethoxysilane (APTES), ethanol (>99%, v/v), 2-thiobarbituric acid (TBA), glycerol, sodium hydroxide, nalidixic acid, hexadecyltrimethylammonium bromide (CTAB), sodium chloride, streptomycin sulfate, thallium acetate and cycloheximide were purchased from Sigma-Aldrich (St. Louis MO, USA). Tween 80, magnesium sulfite heptahydrate, and potassium dibasic phosphate were purchased from J.T. Baker (Estado de Mexico, Mexico). Standard plate count agar, bismuth sulfite agar, nutrient broth, yeast extract, bacteriological agar, and casein peptone were purchased from Bioxon (Cuautitlán, Mexico), while McConkey-sorbitol agar was obtained from Gibco (Mexico City, Mexico). For streptomycin sulfate, thallium acetate, and actidione (STAA) agar, a base with (% w/v): casein peptone, 2; anhydrous glycerol, 1.5; yeast extract, 0. 2; potassium dibasic phosphate, 0.1; magnesium sulfite heptahydrate, 0.1; bacteriological agar, 1.3 was used; it was supplemented with (% w/v): streptomycin sulfate, 0.005; thallium acetate, 0.0005; and cycloheximide, 0.0005.
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10

Mycobacterium tuberculosis H37Rv culture

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Mtb H37Rv was grown at 37°C in complete 7H9 medium [Middlebrook 7H9 (BD), ADC (BD), 0.2% glycerol (Sigma), 0.05% Tween-80 (Sigma)]. Mtb culture used in aerosol experiments was aliquoted into 7H9 complete medium with 20% glycerol at OD-600 ~ 0.5, frozen at -80°C and thawed immediately before use. For plating on solid media, we used complete 7H10 [Middlebrook 7H10 (BD), OADC (BD), 0.5% glycerol (Sigma)] including PANTA (BD).
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