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15 protocols using c1053

1

Protein Isolation and Quantification

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Total protein was isolated using RIPA buffer (C1053, Applygen) supplemented with protease inhibitors (B14001, Bimake) and phosphatase inhibitors (B15001, Bimake) and quantified with a Pierce BCA Protein Assay Kit (23,225, Thermo). Antibodies for immunoblotting were listed in Additional file 1: Table S4.
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2

Protein Extraction and Immunoblotting Protocol

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Total protein was isolated using RIPA buffer (C1053, Applygen) supplemented with protease inhibitors (B14001, Bimake) and phosphatase inhibitors (B15001, Bimake) and quanti ed with a Pierce BCA Protein Assay Kit (23225, Thermo). Primary antibodies for immunoblotting included IGF2BP1 (ab184305, 1:1,000, Abcam), INHBA (ab128958, 1:1,000, Abcam), Smad2/3 (8685T, 1:1,000, CST), G3BP1 (ab181150, 1:1,000, Abcam), p-Smad2 (s255, ab188334, 1:2,000, Abcam), METTL3 (ab195352, 1:1,000, Abcam), and METTL14 (26158-1-AP, 1:500, Proteintech), HIF1α (ab51608, 1:1000, Abcam), GAPDH (60004-1-Ig, Proteintech) was used as a loading control. Secondary antibodies were used at a 1:5,000 dilution (goat anti-mouse/rabbit IgG, HRP conjugate, SA00001-1/2, Proteintech). The signals were detected with superenhanced chemiluminescence (ECL) detection reagent (29050, Engreen).
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3

Protein Extraction and Immunoblotting Protocol

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Total protein was isolated using RIPA buffer (C1053, Applygen) supplemented with protease inhibitors (B14001, Bimake) and phosphatase inhibitors (B15001, Bimake) and quanti ed with a Pierce BCA Protein Assay Kit (23225, Thermo). Primary antibodies for immunoblotting included IGF2BP1 (ab184305, 1:1,000, Abcam), INHBA (ab128958, 1:1,000, Abcam), Smad2/3 (8685T, 1:1,000, CST), G3BP1 (ab181150, 1:1,000, Abcam), p-Smad2 (s255, ab188334, 1:2,000, Abcam), METTL3 (ab195352, 1:1,000, Abcam), and METTL14 (26158-1-AP, 1:500, Proteintech), HIF1α (ab51608, 1:1000, Abcam), GAPDH (60004-1-Ig, Proteintech) was used as a loading control. Secondary antibodies were used at a 1:5,000 dilution (goat anti-mouse/rabbit IgG, HRP conjugate, SA00001-1/2, Proteintech). The signals were detected with superenhanced chemiluminescence (ECL) detection reagent (29050, Engreen).
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4

Quantitative Analysis of Hippocampal Proteins

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Total protein was extracted from the hippocampus in RIPA lysis (C1053, APPLYGEN, China) buffer containing a protease inhibitor and supplemented with phosphatase inhibitors (11836170001, Roche, Germany), and centrifuged at 12,000 × g for 5 min at 4°C. The protein was quantified by the BCA protein assay kit. Protein lysates were cleared of insoluble material through centrifugation. Proteins were wet transferred to 0.2 μm pore size, hydrophobic PVDF transfer membranes (ISEQ00010, Millipore, Germany), which were blocked using 5% non-fat milk in 1% TBST buffer for 1 h at room temperature. The membranes were incubated overnight using the following primary antibodies: O-GlcNAc (CTD110.6, 1:1000 dilution) Mouse mAb (12938S, CST, USA), GAPDH (1:5000 dilution) Mouse McAb (60004-1, Proteintech, China). All primary antibodies were used in 5% BSA (CZ1006, czkwbio, China). Membranes were washed in 1%TBST (T1082, Solarbio, China) and incubated with the following appropriate secondary antibodies: goat anti-mouse HRP. The secondary antibodies were used at a 1:5,000 and 1:10000 dilution in 5% BSA. Protein bands were visualized following exposure of the membranes to ECL (RM0021, ABclonal, China) and quantified by densitometry analysis using Image software.
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5

Western Blot Analysis of VSMCs

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VSMCs were washed with PBS, lysed with RIPA lysis buffer containing phosphatase inhibitor (C1053, Applygen Technology, China) for total protein extraction on ice. Following the routine procedures of Western blot, 20 μg total protein per sample was electrophoresed on SDS-PAGE gel, then transferred to PVDF membrane (Invitrogen, USA), and blocked with 5% defatted milk powder at room temperature. The membranes were incubated overnight with the primary antibodies of OPN (1 : 1000, AF0227), SM-MHC (1 : 1000, DF8344) PIK3C2A (1 : 1000, DF2623), LC3 (1 : 1000, AF5402), Beclin-1 (1 : 1000, AF5128), p62 (1 : 1000, AF5384), C/EBPα (1 : 1000, AF6333), MMP-2 (1 : 1000, AF5330), MMP-9 (1 : 1000, AF5228), or GAPDH (1 : 1000, AF7021), followed by the incubation at room temperature with the secondary antibody (1 : 2000). All antibodies were purchased from Affinity Biosciences (Australia). Then, the bands were exposed with ECL solution and visualized by Chemi Doc MP. The bands were analyzed by the ImageJ software with GAPDH as the internal reference.
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6

Preparation and Quantification of Protein Extracts

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Brain tissue and cell homogenates were lysed in radio immunoprecipitation buffer (RIPA, APPLYGEN, C1053) with added protease and phosphatase inhibitors (Roche Diagnostics, 04693132001 and 4906837001), according to previously described methods [27 (link)]. Homogenates were centrifuged at 12,000 g for 30 min at 4°C, and the supernatant fraction was collected for analyses. After centrifugation, the supernatant fraction was collected and termed the RIPA soluble fraction. The pellet was resuspended in 8 M urea and termed the RIPA insoluble fraction [49 (link)]. The protein concentration was determined using a bicinchoninic acid protein assay kit (BCA; Pierce Biotechnology, 23227) according to the manufacturer’s instructions. Proteins (30 µg) were separated by 12%–15% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto a polyvinylidene fluoride membrane. After blocking with 5% milk for 1 h, membranes were incubated with primary antibodies overnight at 4°C. Secondary antibodies were incubated for 1 h. ACTB was used as a loading control. Immunoblots were visualized with a LI-COR IR Odyssey imaging system (Lincoln, NE, USA) and quantified using ImageJ software (NIH, Bethesda, MD, USA).
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7

PDAC Tissue Western Blotting Analysis

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Western blotting was conducted as previously reported 22 (link). Briefly, we consistently collected PDAC surgical resection pathological specimens without any bias or pre-screening during 2019, from which 42 paired PDAC tissues and paracancer tissues were randomly selected for western blot analysis. 100 mg samples were lysed in radioimmunoprecipitation assay (RIPA) buffer (APPLYGEN, C1053+) containing 1% protease inhibitor and 1% phosphatase inhibitors for 30min on ice. Then, centrifugation at 12,000 × g for 15 min at 4 °C, the supernatant proteins were quantified using BCA assay (Thermo Scientific, BCA protein assay kit, 23225). Thirty micrograms of protein were mixed with 5 × loading buffer and denatured in a 95 °C water bath. Primary antibodies against TIGIT rabbit mAb (Abcam, ab243903, 1:1000), CD155 rabbit mAb (Cell Signaling Technology, #81254, 1:1000), and anti-β-Actin (D6A8) rabbit mAb (Cell Signaling Technology, #8457, 1:1000) were incubated with PDAC tissues overnight at 4°C for the following blot detection.
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8

Western Blot Analysis of Ltf Protein

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Total protein from cells or tissues was extracted with RIPA (C1053, Applygen). Total protein was quantified by BCA protein assay (23228, Thermo Scientific). All samples were electrophoresed on 10% SDS-PAGE gels before being transferred to a polyvinylidene fluoride membrane (Millipore). Membranes were blocked in 5% skim milk and then incubated with primary antibody overnight at 4 °C. The primary antibodies used in this study were as follows: Ltf (1:250, bs-5810R, Bioss), α-tubulin (B1052, Biodragon, Beijing), β-actin (sc-47778, Santa Cruz). After being treated with the secondary antibodies for 1 h, the protein bands were observed with ECL chemiluminescence solution. The relative intensity of protein signals was normalized to the corresponding loading control intensity and quantified by densitometric analysis with ImageJ software (https://imagej.nih.gov/ij/).
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9

GABA Receptor Expression Analysis in Rat Hippocampus

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The right hippocampal tissue of rats (n=6, per group) was homogenized and lysed in RIPA lysis buffer (C1053; Applygen, Beijing, People’s Republic of China) and protease inhibitor (4693124001; Hoffman-La Roche Ltd., Basel, Switzerland). Protein concentration was quantified with bicinchoninic acid (P1511; Applygen), and the protein was used for Western blot analysis. Mouse monoclonal GABAAR α2 antibody (ab193311; Abcam, Cambridge, UK) at a 1:500 dilution was incubated overnight at 4°C. After incubation, the membranes were washed three times in Tris-buffered saline with Tween 20 and then incubated with the secondary antibody (goat antimouse IgG, ZB-2305; ZSGB-BIO, Beijing, People’s Republic of China) at a dilution of 1:2,500 at room temperature for 1 hour. The blots were visualized with Super ECL Plus Detection Reagent (sc-2048; Santa Cruz Biotechnology Inc., Dallas, TX, USA). The electro-chemi-luminescence (ECL) signals were detected with Quantity One software (Bio-Rad Laboratories Inc., Hercules, CA, USA). Glyceraldehyde 3-phosphate dehydrogenase (GAPDH, ab8245; Abcam) was used as an internal control to validate the amount of protein loaded onto the gels.
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10

Effects of SZ-A, FAG, and DAB on Islets and MIN6 Cells

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The islets of KKAy mice were incubated in RPMI-1640 medium containing vehicle or 100 μg/ml SZ-A for 24 h. MIN6 cells were fasted for 1 h in Krebs buffer (2.8 mM glucose) with or without different concentrations of SZ-A, FAG, or DAB. Then, they were cultured for another 1 h in new Krebs buffer containing 2.8 mM or 16.8 mM glucose combined with SZ-A, FAG, DAB or vehicle. High glucose- and palmitic acid-treated MIN6 cells were coincubated with different concentrations of SZ-A, DNJ or vehicle for 24 h.
Islets or MIN6 cells were homogenized in RIPA lysis buffer (C1053; APPLYGEN, China) containing protease inhibitors (P1265; APPLYGEN, China) and phosphatase inhibitors (P1260; APPLYGEN, China). Protein (10 μg) from each sample was resolved by sodium dodecyl sulfate–polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes for immunoblotting. Rabbit anti-phospho-AMPKα (1:1000, 2535s), rabbit anti-AMPKα (1:1000, 2532s), rabbit-phospho-Erk (1:1000, 9101s), rabbit anti-Erk (1:1000, 9102s), and rabbit anti-HSP90 (1:1000, 4877s) were purchased from Cell Signaling Technology (USA). Goat anti-rabbit IgG/HRP (1:5000, ZDR-5306) was purchased from ZSGB-BIO (China).
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