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53 protocols using methocult h4434 classic

1

Colony Formation Assay of HSPCs

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At 2-3 days postelectroporation, HSPCs were plated in SmartDish 6 well plates (catalogue number 27370; STEMCELL Technologies) containing MethoCult H4434 Classic or MethoCult H4434 Classic without EPO (catalogue numbers 04444 and 04544; STEMCELL Technologies). After 14 days, the wells were imaged using the STEMvision Hematopoietic Colony Counter (STEMCELL Technologies). Colonies were counted and scored to determine the number of CFU-GEMM (colony-forming unit-granulocyte, erythroid, macrophage, megakaryocyte), CFU-GM (colony-forming unit-granulocyte, macrophage), BFU-E (burst-forming uniterythroid) and CFU-E (colony-forming unit-erythroid) colonies.
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2

Quantification of Hematopoietic Progenitor Colonies

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CD34+ cells (1.5 × 103 cells), treated or not with EVs for 20 h, were plated in two 35-mm dishes in MethoCult Classic H4434 (Stem Cell Technologies, Vancouver, BC, Canada) and incubated at 37°C in a humidified atmosphere at 5% CO2. MethoCult classic medium H4434 already contains SCF, IL3, GM-CSF, EPO, and FBS. After another 14 days, colonies were counted with an inverted microscope (Zeiss, Germany). The absolute number of colonies, as a sum of the two dishes, was calculated. The percentage of specific colonies was calculated on the total number of colonies for each experimental condition.
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3

Quantifying Ultrasound-Induced Cell Responses

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In separate experiments without calcein, cells were treated with ultrasound ± microbubbles and samples were harvested for both viability assays and studies on intracellular signaling. Cell concentration was determined by manual counting using a haemocytometer. This was done immediately after treatment with ultrasound and after 24 h of culture. Apoptotic cell death was assessed by adding 0.01 mg/mL Hoechst 33342 (Merck KGaA, Darmstadt, Germany) to cells after 24 h of culturing. Cells were fixed in 4% formaldehyde and imaged by fluorescence microscopy. The total number of cells was determined in Fiji [20 (link)] by adjusting the image brightness and contrast followed by a manual threshold then using the “Analyze particles” function. Apoptotic cells were counted manually using the “Cell counter” plugin in Fiji. Colony forming assay (Methocult™ Classic H4434; Stemcell™ Technologies, Vancouver, BC, Canada) was used to evaluate the proliferation of the MOLM-13 cells. Cells were seeded immediately after treatment and colonies were counted after 7–10 days incubation. All experiments were performed in triplicate.
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4

Clonogenic Assay of CD34+ Cells

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Approximately 500 CD34+ cells in total were seeded into MethoCult Classic H4434 (STEMCELL Technologies, Vancouver, BC, Canada) for triplicates in 3.5-cm plates following the manufacturer’s protocol. After 2 weeks of culture, colonies were scored by morphology, enumerated, and either plucked as individual colonies or pooled and subjected to qPCR for assessment of VCNs (c/dg).
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5

Hematopoietic Stem Cell Colony Assay

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After lentiviral transduction, approximately 2000 HSCs were plated into Methocult Classic H4434 (StemCell Technologies, 04434) following the manual. After 14 days of culture, the number of Colony Forming Unit-Erythroid (CFU-E), Burst Forming Unit-Erythroid (BFU-E) and Colony Forming Unit-Granulocyte/Erythroid/Macrophage/Megakaryocyte (CFU-GEMM), Colony Forming Unit Granulocyte/Monocyte (CFU-GM) colonies were determined and scored based on colonies morphology, and individual BFU-E or pooled colonies were collected for VCN measurement and HBB expression analysis.
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6

Hematopoietic Stem Cell Colony Assay

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After lentiviral transduction, approximately 2000 HSCs were plated into Methocult Classic H4434 (StemCell Technologies, 04434) following the manual. After 14 days of culture, the number of Colony Forming Unit-Erythroid (CFU-E), Burst Forming Unit-Erythroid (BFU-E) and Colony Forming Unit-Granulocyte/Erythroid/Macrophage/Megakaryocyte (CFU-GEMM), Colony Forming Unit Granulocyte/Monocyte (CFU-GM) colonies were determined and scored based on colonies morphology, and individual BFU-E or pooled colonies were collected for VCN measurement and HBB expression analysis.
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7

Differentiation and characterization of EBs

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Single-cell suspensions of EBs differentiated at day 10 were prepared as follows: EBs were dissociated with 0.05% trypsin for 10 min in a 37 °C water bath. For flow cytometry, cells were resuspended at approximately 1.0 × 105 cells/ml with PBS containing 2% FBS and stained with fluorochrome-conjugated monoclonal antibodies including fluorescein isothiocyanate (FITC)- and phycoerythrin (PE)-conjugated CD34, allophycocyanin (APC)-conjugated CD31, and PE-conjugated VE-cadherin, peridinin chlorophyll protein complex (PerCP)-conjugated CD45 at a concentration of 5 μg/ml. Cells were stained for 30 min at 4 °C and washed in PBS containing 2% FBS. For isolation of CD34+ cells, dissociated EB cells or mononuclear UC cells were stained with PE-conjugated CD34 and isolated by FACS with a FACSAria III (BD Biosciences, Franklin Lakes, NJ). Hematopoietic colony-forming assays of H9-CD34+ cells were performed according to the protocol of MethoCult™ H4434 Classic (STEMCELL Technologies, Vancouver, Canada).
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8

Differentiation of iPSC into Hematopoietic Progenitors

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A two-dimensional monolayer system was used to differentiate iPSC into CD34+CD43+ hematopoietic progenitor cells (HPC). Clonogenic assays were performed by mixing HPC in serum-free medium with MethoCult H4434 classic (Stem Cell Technologies, Grenoble, France) before plating the cell suspension in 35-mm dishes. Colonies were scored after 14 days and analyzed on a BD LSRFortessa X-20. HPC mixed with serum-free fibrin clots were seeded for 10 days in the presence of thrombopoietin and stem cell factor before measuring colony-forming unit-megakaryocyte (CFU-Mk) colonies. HPC were also suspended in serum-free liquid medium with growth factors for 10 days before flow analysis of cell surface markers and May-Grünwald-Giemsa staining of cytospins. More details are provided in the Online Supplementary Material.
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9

Murine Leukemia and AML Assays

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Fresh primary murine leukemia or rapidly thawed primary AML patient bone marrow and mobilized peripheral blood samples were allowed to recover in RPMI-10+ or RPMI-10 respectively. Primary cells were treated with salinomycin or DMSO for 16 hours in liquid culture then plated in methylcellulose. Similarly treated human cells were seeded at 1 × 105/ml in MethoCult™ H4434 Classic (Stem Cell Technologies) and treated mouse leukemias were either seeded at 5 × 105/ml in MethoCult™ GF M3434 medium (Stem Cell Technologies) or directly transplanted (5 × 105 cells) into sub-lethally irradiated (850 cGy) recipient mice. Recipient mice were followed for up to 80 days, or disease endpoint, at which point necropsy was performed.
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10

Myeloid Differentiation Potential Assessment

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Colony forming unit (CFU) assays were prepared on day 0, 5, 14 and 21 of culture in order to retrospectively asses the myeloid differentiation potential of the harvested cells. 1500 cells were resuspended in 300 µl IMDM + 2% FBS (Stemcell Technologies SARL, Grenoble, France) and then mixed with 3 ml Methocult H4434 Classic (Stemcell Technologies). 1.1 ml of this cell suspension were plated in triplicate into 35 mm Petri dishes (Greiner Bio-One, Frickenhausen, Germany) and incubated in a wet chamber at standard cell culture conditions. After 12 days the colonies were counted and individual colonies were assigned to one of the following colony types: CFU-GEMM (granulocyte, erythroid, monocyte & megakaryocyte progenitors), CFU-GM (granulocyte & macrophage progenitors) or BFU-E (erythroid progenitors).
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