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1

Tick Saliva and Gland Extraction

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In order to obtain saliva, 400 semi-engorged female ticks were taken directly from susceptible hosts (Holstein breed), washed, dried and injected in the haemocoele with a solution of dopamine (Revivan®, Zambon, São Paulo, Brazil). Saliva was collected in protease inhibitors according to manufacturer’s recommendations (Complete, Mini EDTA-free, Roche, Basel, Switzerland) and frozen at -20 °C. FSG and MSG were collected from ticks fed on susceptible (hereafter designated FSGS or MSGS) and resistant hosts (FSGR or MSGR) under a dissecting microscope and with sterile dissection tools and the glands were put in water with protease inhibitors. The samples were sonicated in order to obtain the extract. The extracts of UFL were obtained from 1 mg of egg masses from female ticks fed on resistant or susceptible hosts (hereafter designated UFLS and UFLR). The larvae were put in water with protease inhibitors according to the manufacturer’s recommendations (Complete, Mini EDTA-free, Roche, Basel, Switzerland), followed by pulverization using a pestle and liquid nitrogen in order to obtain the extract. Proteins concentrations were measured by the Coomassie assay, according to the manufacturer’s instructions (Pierce, Rockford, IL, USA).
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2

Nuclear Protein Extraction Protocol

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Cells in 10 cm dishes were transfected at 50% confluency. At 80% confluency cells were washed once with cold PBS, before being scraped, pelleted and lysed in 100 μl PBS, 0.1% (v/v) NP40 by pipetting. Nuclei were recovered by short centrifugation and the supernatant was discarded. After washing once with ice-cold PBS, nuclei were lysed successively in 100 μl strip buffer (10 mM Tris–HCl pH 7.4, 1 mM EGTA, 1.5 mM KCl, 5 mM MgCl2, 290 mM sucrose, 0.1% (v/v) Triton X-100, 1 mM DTT, 1× cOmplete mini EDTA-free (Roche)), 100 μl low/medium/high salt lysis buffer (20 mM HEPES–KOH pH 7.9, 25% glycerol, 200/400/800 mM KCl, 1.5 mM MgCl2, 0.2 mM EDTA, 1 mM DTT, 1× cOmplete mini EDTA-free (Roche)) for 5 min on ice each. Supernatants were combined and salt concentration was adjusted to 150 mM KCl with lysis buffer without KCl. Extract was cleared at 21 000 × g for 5 min and directly used for pull-down experiments.
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3

Caspase-3 and PARP Protein Analysis

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Total proteins were extracted from U87-MG cells using RIPA buffer (25 mM Tris-HCl, pH 7.6; 150 mM NaCl; 1% NP-40; 1% sodium deoxycholate; and 0.1% SDS) containing a protease inhibitor cocktail (complete, Mini, EDTA-free, Roche Applied Science, Penzberg, Germany) and homogenized using an ultrasonic homogenizer. After quantitative analysis using the Bradford protein assay with a Bio-Rad Dye Reagent (500-0006, Bio-Rad, Hercules, CA, USA), the protein samples were denatured with 5× sample buffer (10% SDS, 25% beta-mercaptoethanol, 50% glycerol, 0.25 M Tris-HCl [pH 6.8], and 0.01% bromophenol blue) and incubated in a water bath at 95°C for 10 min. Cell protein lysates were loaded into 10% SDS-polyacrylamide gels. The gels were transferred onto PVDF filters and incubated with a specific primary antibody to caspase-3 (1:1000) (Novusbio Inc., USA), cleaved caspase-3 (1:1000) (Novusbio Inc., Centennial, CO, USA), PARP (1: 1000) (Cell Signaling Inc., Danvers, MA USA), cleaved PARP (1:1000) (Cell Signaling Inc.), and β-actin (1:1000) (Cell Signaling Inc.). All blots were normalized to the internal standard of β-actin. Bands of interest were visualized using ECL reagents (PerkinElmer, Waltham, MA, USA) and quantified using the UVP BioImaging system (Biospectrum AC Imaging System, Upland, CA, USA) and the ImageJ software program (National Institutes of Health, Bethesda, MD, USA).
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4

Expression and Purification of Wls Proteins

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The C-terminal portion of WlsX (Wls-CTX) was subcloned into the pGEX-4 T-1 (Amersham Biosciences, Piscataway, NJ) and the pET30 (Novagen, Madison, WI) bacterial expression plasmids to create GST- tagged or S-tagged proteins, respectively. GST-tagged Wls-IL1 (residues 254–268), Wls-IL2 (residues 325–331), Wls-IL3 (residues 402–431), Wls-CT (residues 493–541), and A2A-CT (residues 291–412) were prepared previously [36 (link)]. Proteins were synthesized via auto-induction as described by Studier et al. [57 (link)]. Briefly, pGEX-4 T-1 and pET30 plasmids were transformed into BL21 (DE3) E.coli cells and induced using ZYP-5052 auto-induction media. Bacterial proteins were extracted through sonication in PBS containing 1% Triton × 100 and protease inhibitors (cOmplete MINI EDTA free: Roche). Resulting lysates were cleared by centrifugation and stored at − 80 deg. C until use.
GST-tagged proteins were bound to glutathione sepharose beads (GE Healthcare, Piscataway, NJ) and then incubated with the indicated S-tagged proteins. Beads treated with GST alone served as a negative control. Proteins were eluted from the beads with loading dye containing SDS and β-mercaptoethanol, separated by SDS-page, and analyzed by western blotting with HRP-conjugated S-tag antibody (1:5000, Novagen, Madison, WI).
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5

Protein Expression Analysis in Mouse Thyroid Cells

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SPTL and mouse thyroid follicular cells were lysed with RIPA Lysis Buffer
(MilliporeSigma) with proteinase inhibitor cocktail, cOmplete mini EDTA-Free (Roche). The
Pierce BCA Protein Assay Kit (Thermo Fisher Scientific) was used for measuring the protein
concentration of lysates. Samples were subjected to SDS-PAGE and transferred to PVDF
membranes (GE Healthcare). Tris-buffered saline (TBS) buffer containing 5% bovine
albumin fraction V (MP Biomedicals) and 0.1% Tween-20 (Sigma-Aldrich) was used for
blocking. Stripping of membrane was performed using Restore Western Blot Stripping Buffer
(Thermo Fisher Scientific). Antibodies used were those against AKT (#9272, Cell
Signaling Technology), phospho-p44/p42 MAPK (ERK1/2) (Thr202/Thy204) (#9101, Cell
Signaling Technology), ERK1+ERK2 (ab17942, Abcam), PAX8 (clone PAX8R1, ab53490, Abcam),
E-cadherin (clone 24E10, Cell Signaling Technology), α-tubulin (clone DM1A,
sc-32293, Santa Cruz), and β-actin (clone D6A8, #8457, Cell Signaling
Technology). Anti-NKX2-1 and anti-phospho-AKT (Ser473) antibodies were the same as those
used for immunohistochemistry/immunofluorescence.
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6

Tick Organ Homogenization and Protein Extraction

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Blood-fed or FAC-injected whole ticks were homogenized in phosphate-buffered saline (PBS). Midguts and salivary glands were also collected and homogenized in Tris-buffered saline (TBS) with a protease inhibitor (Complete Mini EDTA-free, Roche, Manheim, Germany). Hemolymph was collected from the amputated legs of immobilized ticks. Hemocytes were separated by centrifugation. Protein from whole ticks and organs was extracted as previously described [15] (link). Protein samples were kept at −80°C until use.
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7

Liver Protein Extraction and Western Blot Analysis

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The liver was homogenized using the radioimmunoprecipitation assay lysis buffer (20–188; Millipore) containing a protease inhibitor (1183617001, Complete Mini EDTA‐free; Roche Life Science) and phosphatase inhibitor (04906837001, PhosSTOP phosphatase inhibitor cocktail; Roche Life Science). The homogenates were placed on ice for 60 min and centrifuged (4°C, 1500 g, 20 min). The total protein content of the samples was determined using a BCA protein assay kit (23227; Pierce). Proteins (10 μg of each sample) separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis were transferred to polyvinylidene difluoride membranes before being blocked for 60 min with 5% (w/v) bovine serum albumin in Tris‐buffered saline with 0.1% (v/v) Tween 20 (TBST). Membranes were incubated overnight at 4°C with the following primary antibodies: phospho‐glycogen synthase (GS) (p‐GS, Ser641, 3891; Cell Signaling Technology). After incubation, the membranes were washed in TBST, incubated for 1 h at room temperature with secondary antibodies (A102PT, American Qualex), and washed again in TBST. Chemiluminescent reagents (RPN 2232 and RPN 2109; GE Healthcare Japan) were used for blot detection. The blots were scanned and quantified using ChemiDoc XRS (170‐8071; Bio‐Rad) and Quantity One software (170‐9600; Bio‐Rad).
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8

Multiplex Cytokine Profiling in Brain and Plasma

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Blood samples were collected by facial vein puncture, centrifuged to separate the plasma and frozen at −80 °C. Hemibrain tissue was snap-frozen after PBS perfusion and stored at −80 °C until analysis. Tissue homogenates from hemibrains were prepared in RIPA-lysis buffer containing 65 mM Tris-base, 150 mM NaCl, 1% Triton-X, 0.25% sodium deoxycholate, 1 mM EDTA, and a mix of phosphatase and protease inhibitors (“phosSTOP” and “Complete, mini, EDTA-free,” Roche Applied Science). BCA Protein Assay Kit (Pierce #23225, ThermoScientific, Waltham, MA USA) was used for determining the total protein concentration. To measure the concentration of cytokines we used the ProcartaPlex® Multiplex Immunoassay (eBioscience, Waltham, MA USA) that uses the Luminex technology (multi-analyte profiling beads) to enable the simultaneous detection and quantitation of multiple cytokines and chemokines per sample. All samples were measured in duplicate and the mean values of the two readouts were calculated and used in subsequent statistical analysis. Data for the analysis are presented as pg cytokine/chemokine per mg total protein for the brain lysates or pg/ml plasma sample.
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9

Quantification of Cathepsin B Protein

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Confluent HUVECs in 6-well plates were treated as indicated. Cells were washed with ice-cold PBS and lysed with RIPA buffer supplemented with protease inhibitors (Complete Mini EDTA-free; Roche, Mannheim, Germany), sodium orthovanadate, sodium fluoride, phenylmethylsulphonyl fluoride, β-glycerophosphate, sodium pyrophosphate and H2O2. Protein determination was performed using the Pierce BCA Protein Assay Kit (Thermo Fisher Scientific). Equal amounts of proteins (10–20 μg) were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE; Bio-Rad Laboratories, Munich, Germany). Separated proteins were transferred onto polyvinylidene difluoride membranes by tank blotting (Bio-Rad Laboratories) for immunodetection. Membranes were blocked with 5% bolting-grade milk powder (Carl Roth) in TBS containing 0.1% Tween 20 (Sigma-Aldrich). The following antibodies were used: mouse anti-human cathepsin B antibody (IM27L, Merck) (1:500), mouse anti-β-actin-peroxidase antibody (A3854, Sigma-Aldrich) (1:100,000) and anti-mouse IgG horse radish peroxidase (HRP)-linked antibody (7076, Cell Signaling, Frankfurt, Germany) (1:5,000). ImageJ version 1.49m was used for densitometric analysis.
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10

Cell Lysis and Western Blot Analysis

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Cells were harvested, washed with PBS, and immediately either lysed or snap‐frozen and stored at −80°C until lysis. Cells were lysed with modified RIPA buffer (150 mM NaCl, 50 mM Tris, pH 7.5, 2 mM MgCl2, 0.1% SDS, 2 mM DDT, 0.4% deoxycholate, 0.4% Triton X‐100, 1X complete protease inhibitor cocktail (complete Mini EDTA‐free, Roche) and 1 U/µl benzonase nuclease (Novagen) at room temperature for 15 min. Cell lysates were quantified using Pierce 660 nm protein assay reagent and proteins were loaded onto SDS‐PAGE for Western blot. The Trans‐Blot Turbo transfer system (Bio‐Rad) was used according to the manufacturer’s instructions. See Dataset EV10 for antibodies and dilutions. An Odyssey infrared imaging system was used to visualize blots (LI‐COR) following the manufacturer’s instructions.
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