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Hematoxylin eosin he

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Hematoxylin-eosin (HE) is a widely used biological stain for histological samples. It consists of two components: hematoxylin, which stains nuclei blue, and eosin, which stains cytoplasm and other structures various shades of red, pink, and orange. HE staining provides a basic differentiation of cellular and tissue components, allowing for the visual examination and analysis of prepared samples.

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50 protocols using hematoxylin eosin he

1

Histopathological Analysis of Liver Tissues

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Both the liver portion extracted at the time of hepatectomy and that collected at autopsy were processed for histopathological examination. Liver tissues were fixed in 10% formalin for 48 hours, routinely processed, and sliced into sections of 4 μm in thickness. For detection of liver fibrosis, sections were stained with picrosirius red (PSR; Sigma‐Aldrich), anti–α‐smooth muscle actin (α‐SMA) antibodies (AbCam) and anti‐desmin antibodies (Boehringer). For detection of macrophage infiltration, sections were stained with antibodies against CD68 (AbCam) and F4/80 (AbCam). For detection of liver proliferation, sections were stained with anti–proliferating cell nuclear antigen (PCNA) antibodies (Dako). Sections were also stained with hematoxylin‐eosin (H & E) and periodic acid–Schiff (both from Sigma‐Aldrich). After staining, specimens were photographed under a microscope (Olympus). Histological and immunohistochemical results were quantified using WinRoof 7.4 software (Mitani Corporation).
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2

Histological Analysis of Kidney Tissues

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Both left and right kidneys, ureters and bladder were surgically excised and fixed in phosphate buffered saline (PBS) containing 10% formaldehyde and sections were stained with Hematoxylin & Eosin (H&E) (Sigma-Aldrich) by standard protocols as described earlier [13] (link), [14] (link). At least three sections per animal were analyzed by a histopathologist.
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3

Spinal Tuberculosis Experimental Model in Rabbits

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New Zealand white rabbits (3–4 weeks; 3.25±0.25 kg) were randomly divided into 4 groups: infection groups (n=30, including Spinal tuberculosis experimental group, Spinal tuberculosis experimental with 20 mg/kg ISL treated group, Spinal tuberculosis experimental with 100 mg/kg ISL treated group, n=10 in each group) and control group (n=10). All of the rabbits were anesthetized with 2% barbital sodium indodine (20 mg/kg; Sigma Aldrich), and holes were drilled on the 6th lumbar vertebras of rabbits. Gelfoam sponges socked in 0.1 ml H37Rv suspension or normal saline were placed into the perforations of these rabbits. After suturing the incisions, these rabbits were fed alone and 20 mg/kg ISL, 100 mg/kg ISL or normal saline were injected into these rabbits through auricular vein everyday according the groups they belong. The treatment continued for 10 weeks, and tissues surrounding the 5–7 lumbar vertebral bones were dissected for Hematoxylin-Eosin (HE, Sigma Aldrich) staining and peripheral venous bloods were collected for later analyses. All of the experiments were approved by Ethics Committee of Institutional Animal Care and Use Committee at National Defense Medical Center.
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4

Histological Analysis of Skin Tissue

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The skin tissue was fixed with 4% paraformaldehyde overnight and cut into 4 μm thick sections. Then the sections were dehydrated with gradient alcohol, washed, and embedded in paraffin. Following that, the sections were stained with hematoxylin–eosin (HE; Sigma‐Aldrich). Sections were observed under a microscope (Nikon).
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5

Quantitative Histological Assessment of Renal Injury

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For light microscopy, paraffin-embedded cortex and medulla renal sections (4 µm thick) were stained with hematoxylin-eosin (H-E) (Sigma-Aldrich, St Louis, MO, USA). The kidney injury score was calculated using a previously described semiquantitative index [37 (link)]. Briefly, tubular damage scoring was defined as the blebbing of apical membranes, tubular cast formation, epithelial necrosis, tubular vacuolization and the presence of mitotic nuclei. Morphometric examination and scoring were performed by observers blinded to the animals’ treatment condition, using the following semiquantitative index: 0 points: no damage; 1 point: damage from 0 to 25% of the sample; 2 points: damage from 25 to 50% of the sample; 3 points: damage from 50 to 75% of the sample; 4 points: damage higher than 75% of the sample. The injury score was calculated as the sum of this semiquantitative assessment of tubular injury. Samples were examined with an Olympus BX-50 microscope (Olympus, Tokyo, Japan).
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6

Histological Analysis of Ovarian Tissue

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Ovarian tissue samples were fixed in 4% paraformaldehyde and dehydrated with an ethanol concentration gradient. Tissues were sectioned after paraffin embedding and stained with hematoxylin–eosin (HE) (Sigma-Aldrich, St. Louis, MO, USA). The tissues were observed with an optical microscope (Olympus Corporation, Tokyo, Japan).
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7

Decalcification and Histological Analysis of Bone

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The specimens were decalcified in 12.5% ethylenediaminetetraacetic acid (EDTA) for about 2 weeks at a pH 7.2 (Sigma, New York, NY, USA) and room temperature. The solution was changed daily. To avoid any eventual skeletal muscle effect on bone formation at both tube ends, each specimen was cut into three equally sized parts, from which only the middle part was processed for sectioning. Subsequently specimens were dehydrated with graded series of ethanol and embedded in paraffin. With a microtome (Leica RM2155; Leica Biosystems, Nussloch, Germany), five sections, each 6 μm in thickness, were cut in five equally sized pieces of the middle part. All tissue sections were stained with hematoxylin/eosin (H&E) (Sigma, NY, USA; Merck, NJ, USA, resp.) and investigated visually as well as photographed under a light microscope (Leica DMLB), at both ×2 and ×10 magnifications.
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8

Histological Analysis of Mouse Hearts

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Staged mouse hearts were fixed 1 h in 4% paraformaldehyde, washed in phosphate buffered saline, and then paraffin embedded, sectioned at 8-μm, and then processed as previously described [4 (link)]. Sections were stained with hematoxylin & eosin (H & E) (Sigma-Aldrich, St. Louis, MO, USA) according to the manufacturer’s instruction. X-gal staining was performed as previously described [4 (link)]. Sections or whole-mount embryos were examined using an Axio Zoom. V16 (Zeiss, Oberkochen, Germany) was photographed with an Axiocam digital camera (Zen 2011, Zeiss).
Polyclonal anti-Nos3 antibody was purchased from Microm (Rabbit, 1:50) and used on OCT embedded and cryo-sectioned fixed tissue. The anti-Pecam (CD31, Rat, 1:100) antibody was purchased from BD-Pharmingen (BD Biosciences, San Jose, CA, USA). The Alexa fluorescent-conjugated antibody (Life Technologies, Thermo Fischer Scientific, Carlsbad, CA, USA) was used at 1:500. Images were taken with DM5000 microscope with LAS software (Leica Microsystems, Wetzlar, Germany). For each experiment, a minimum of 3 embryos of each genotype was scored.
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9

DSS-Induced Colitis Model in Mice

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Mice were treated with 2% DSS (160110, molecular weight: 36,000–50,000 Daltons; MP Biologicals, LLC, France) drinking water for 5 days to induce colitis. Body weight and disease activity index (DAI) were measured and recorded every day. DAI was determined by percent of weight loss, degree of stool consistency and stool bleeding. At end of the experiment, the mice were sacrificed, and the length of the colon was determined. Subsequently, the colon sections were fixed in 4% paraformaldehyde for 24 h then embedded in paraffin, stained with hematoxylin-eosin (HE) (Sigma-Aldrich, St, Louis, MO, USA), and then evaluated and scored in a blind manner as our previously described (16 (link), 17 (link)).
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10

Spinal Cord Tissue Analysis Following Surgery

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At 12 weeks after surgery, the animals were sacrificed by deep anesthesia and then perfused intracardially using 0.9% physiological saline and 4% paraformaldehyde. After extraction of the spinal cord, samples were obtained from the corresponding spinal segments (L4 and L5) (Gelderd and Chopin, 1977) and were maintained in 4% paraformaldehyde for 7 days. Complete paraffin serial sections (10 and 25 µm thick) were made using a microtome (Leica RM2125; Nnussloch, Germany). By systematic uniform random sampling, 10 sections of each sample were selected by randomly choosing a numbered sample (between 1 and 10). The sample then was stained with hematoxylin & eosin (H&E; Sigma, St. Louis, MO, USA) and Cresyl violet (Sigma). The sections were evaluated in stereological software (Stereo Investigator, Williston, VT, USA), and the anterior horn volume, motoneuron mean volume, and motoneuron and neuroglial cell numbers were estimated (Gundersen et al., 1988a, b).
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